Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS8Q8N3P4 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC21.3■■□□□ 1
VPS8Q8N3P4 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VPS8Q8N3P4 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
VPS8Q8N3P4 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC21.3■■□□□ 1
VPS8Q8N3P4 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC21.3■■□□□ 1
VPS8Q8N3P4 SRPK2P-201ENST00000523408 1100 ntBASIC21.3■■□□□ 1
VPS8Q8N3P4 AC092862.1-201ENST00000541534 533 ntBASIC21.3■■□□□ 1
VPS8Q8N3P4 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS8Q8N3P4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS8Q8N3P4 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC21.3■■□□□ 1
VPS8Q8N3P4 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC21.3■■□□□ 1
VPS8Q8N3P4 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS8Q8N3P4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS8Q8N3P4 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS8Q8N3P4 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC21.3■■□□□ 1
VPS8Q8N3P4 CA6-205ENST00000480186 1493 ntTSL 2 BASIC21.3■■□□□ 1
VPS8Q8N3P4 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC21.3■■□□□ 1
VPS8Q8N3P4 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS8Q8N3P4 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 NHP2-202ENST00000314397 599 ntTSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 SRP14-204ENST00000558720 780 ntTSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 KF455155.1-201ENST00000604493 303 ntBASIC21.29■■□□□ 1
VPS8Q8N3P4 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC21.29■■□□□ 1
VPS8Q8N3P4 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS8Q8N3P4 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC21.29■■□□□ 1
VPS8Q8N3P4 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 CICP9-201ENST00000444451 1913 ntBASIC21.29■■□□□ 1
VPS8Q8N3P4 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS8Q8N3P4 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 STK16-202ENST00000409260 1493 ntTSL 5 BASIC21.29■■□□□ 1
VPS8Q8N3P4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS8Q8N3P4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS8Q8N3P4 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS8Q8N3P4 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
VPS8Q8N3P4 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 IL2RG-204ENST00000456850 540 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 AC026470.1-201ENST00000478038 846 ntBASIC21.29■■□□□ 1
VPS8Q8N3P4 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC21.29■■□□□ 1
VPS8Q8N3P4 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC21.29■■□□□ 1
VPS8Q8N3P4 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC21.29■■□□□ 1
VPS8Q8N3P4 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS8Q8N3P4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
VPS8Q8N3P4 TNN-203ENST00000622870 3719 ntTSL 5 BASIC21.28■■□□□ 1
VPS8Q8N3P4 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VPS8Q8N3P4 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC21.28■■□□□ 1
VPS8Q8N3P4 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 OR7E155P-201ENST00000412208 1014 ntBASIC21.28■■□□□ 1
VPS8Q8N3P4 CD37-203ENST00000426897 1204 ntTSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 AC112250.1-201ENST00000504640 745 ntBASIC21.28■■□□□ 1
VPS8Q8N3P4 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC21.28■■□□□ 1
VPS8Q8N3P4 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC21.28■■□□□ 1
VPS8Q8N3P4 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 AP001120.3-201ENST00000585729 489 ntBASIC21.28■■□□□ 1
VPS8Q8N3P4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
VPS8Q8N3P4 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS8Q8N3P4 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
VPS8Q8N3P4 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
VPS8Q8N3P4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC21.27■■□□□ 1
VPS8Q8N3P4 PTN-202ENST00000393083 1599 ntTSL 5 BASIC21.27■■□□□ 1
VPS8Q8N3P4 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC21.27■■□□□ 1
VPS8Q8N3P4 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC21.27■■□□□ 1
VPS8Q8N3P4 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC21.27■■□□□ 1
VPS8Q8N3P4 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC21.27■■□□□ 1
VPS8Q8N3P4 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 NDUFAF6-201ENST00000396111 1869 ntTSL 5 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms