Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 MRPL55-212ENST00000366739 641 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
RXRBP28702 TSACC-203ENST00000368253 512 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 HSD17B3-201ENST00000375262 984 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 USP17L6P-201ENST00000382470 1197 ntBASIC17.61■□□□□ 0.41
RXRBP28702 RNASE11-201ENST00000398008 872 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 TACR1-202ENST00000409848 1270 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 AP001625.3-201ENST00000416179 449 ntTSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 HUS1-202ENST00000432325 1125 ntTSL 5 BASIC17.61■□□□□ 0.41
RXRBP28702 DDTP1-201ENST00000443589 383 ntBASIC17.61■□□□□ 0.41
RXRBP28702 SNHG11-211ENST00000444816 621 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC17.61■□□□□ 0.41
RXRBP28702 SNHG11-214ENST00000457218 880 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 AC110753.1-201ENST00000505711 1022 ntBASIC17.61■□□□□ 0.41
RXRBP28702 AC091564.7-201ENST00000545572 464 ntTSL 3 BASIC17.61■□□□□ 0.41
RXRBP28702 MIR3940-201ENST00000579148 102 ntBASIC17.61■□□□□ 0.41
RXRBP28702 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC17.61■□□□□ 0.41
RXRBP28702 AC012615.6-203ENST00000590531 272 ntTSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 ZNF544-209ENST00000596929 543 ntTSL 4 BASIC17.61■□□□□ 0.41
RXRBP28702 AC124319.4-201ENST00000622931 2161 ntBASIC17.61■□□□□ 0.41
RXRBP28702 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 AZGP1-201ENST00000292401 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
RXRBP28702 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
RXRBP28702 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.61■□□□□ 0.41
RXRBP28702 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
RXRBP28702 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RXRBP28702 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
RXRBP28702 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RXRBP28702 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 SYNGR4-201ENST00000344846 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 SNCG-202ENST00000372017 701 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 AL391987.4-201ENST00000377547 439 ntTSL 3 BASIC17.6■□□□□ 0.41
RXRBP28702 PRSS3-203ENST00000379405 834 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 FKBP1A-201ENST00000381715 705 ntTSL 2 BASIC17.6■□□□□ 0.41
RXRBP28702 AC246680.1-201ENST00000444624 494 ntTSL 3 BASIC17.6■□□□□ 0.41
RXRBP28702 AC023886.1-202ENST00000504009 477 ntTSL 3 BASIC17.6■□□□□ 0.41
RXRBP28702 OR7E14P-201ENST00000526721 1000 ntBASIC17.6■□□□□ 0.41
RXRBP28702 OR5BA1P-201ENST00000529722 982 ntBASIC17.6■□□□□ 0.41
RXRBP28702 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC17.6■□□□□ 0.41
RXRBP28702 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC17.6■□□□□ 0.41
RXRBP28702 AC008915.2-201ENST00000570080 730 ntTSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 SARS2-211ENST00000598831 665 ntTSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 AL669831.6-201ENST00000635557 837 ntBASIC17.6■□□□□ 0.41
RXRBP28702 AL513478.3-201ENST00000641038 1095 ntBASIC17.6■□□□□ 0.41
RXRBP28702 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 PPATP1-201ENST00000496669 1547 ntBASIC17.6■□□□□ 0.41
RXRBP28702 IKZF3-211ENST00000394189 1552 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 TMBIM7P-203ENST00000641617 1718 ntBASIC17.6■□□□□ 0.41
RXRBP28702 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.6■□□□□ 0.41
RXRBP28702 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RXRBP28702 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC17.6■□□□□ 0.41
RXRBP28702 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC17.6■□□□□ 0.41
RXRBP28702 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.6■□□□□ 0.41
RXRBP28702 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.6■□□□□ 0.41
RXRBP28702 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RXRBP28702 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RXRBP28702 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.59■□□□□ 0.41
RXRBP28702 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.59■□□□□ 0.41
RXRBP28702 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RXRBP28702 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RXRBP28702 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RXRBP28702 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.59■□□□□ 0.41
RXRBP28702 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RXRBP28702 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC17.59■□□□□ 0.41
RXRBP28702 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RXRBP28702 CABYR-203ENST00000399496 1414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RXRBP28702 CASC15-202ENST00000561912 1449 ntTSL 5 BASIC17.59■□□□□ 0.41
RXRBP28702 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RXRBP28702 WFDC2-201ENST00000217425 356 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms