Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
CNOT4O95628 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 DNAJB5-204ENST00000454002 2818 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.51□□□□□ -0.41
CNOT4O95628 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 OR2K2-202ENST00000374428 1038 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC12.51□□□□□ -0.41
CNOT4O95628 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC12.51□□□□□ -0.41
CNOT4O95628 OR8T1P-201ENST00000421347 918 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 AL807761.2-201ENST00000422849 729 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 DNAJB1P1-201ENST00000429417 1024 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC12.51□□□□□ -0.41
CNOT4O95628 AC098934.1-203ENST00000442868 1262 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 FTH1P22-201ENST00000456305 520 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC12.51□□□□□ -0.41
CNOT4O95628 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC12.51□□□□□ -0.41
CNOT4O95628 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC12.51□□□□□ -0.41
CNOT4O95628 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC12.51□□□□□ -0.41
CNOT4O95628 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 RN7SL665P-201ENST00000578793 300 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 AC007326.1-201ENST00000604539 458 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC12.51□□□□□ -0.41
CNOT4O95628 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 TEKT4P2-202ENST00000559466 1312 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC12.51□□□□□ -0.41
CNOT4O95628 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CNOT4O95628 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.51□□□□□ -0.41
CNOT4O95628 PCDHA5-203ENST00000614258 4248 ntBASIC12.51□□□□□ -0.41
CNOT4O95628 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CNOT4O95628 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC12.5□□□□□ -0.41
CNOT4O95628 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CNOT4O95628 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC12.5□□□□□ -0.41
CNOT4O95628 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.5□□□□□ -0.41
CNOT4O95628 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CNOT4O95628 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 MIR645-201ENST00000385283 94 ntBASIC12.5□□□□□ -0.41
CNOT4O95628 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 RPSAP31-201ENST00000416648 895 ntBASIC12.5□□□□□ -0.41
CNOT4O95628 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC12.5□□□□□ -0.41
CNOT4O95628 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC12.5□□□□□ -0.41
CNOT4O95628 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC12.5□□□□□ -0.41
CNOT4O95628 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.5□□□□□ -0.41
CNOT4O95628 CMC2-204ENST00000562713 573 ntTSL 3 BASIC12.5□□□□□ -0.41
CNOT4O95628 AC135983.4-201ENST00000564116 1262 ntBASIC12.5□□□□□ -0.41
CNOT4O95628 CMC2-209ENST00000565108 399 ntTSL 2 BASIC12.5□□□□□ -0.41
CNOT4O95628 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC12.5□□□□□ -0.41
CNOT4O95628 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.5□□□□□ -0.41
CNOT4O95628 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CNOT4O95628 AL133467.4-201ENST00000602953 725 ntBASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms