Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 SERBP1P1-201ENST00000396021 1160 ntBASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 AC011298.3-201ENST00000615796 283 ntBASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPC1L1Q9UHC9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC30.4■■■□□ 2.46
NPC1L1Q9UHC9 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
NPC1L1Q9UHC9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC30.4■■■□□ 2.46
NPC1L1Q9UHC9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
NPC1L1Q9UHC9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC30.4■■■□□ 2.46
NPC1L1Q9UHC9 PTCHD3P2-201ENST00000424937 1205 ntBASIC30.4■■■□□ 2.46
NPC1L1Q9UHC9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC30.4■■■□□ 2.46
NPC1L1Q9UHC9 AC019069.1-201ENST00000610008 1333 ntBASIC30.39■■■□□ 2.46
NPC1L1Q9UHC9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
NPC1L1Q9UHC9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPC1L1Q9UHC9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC30.39■■■□□ 2.46
NPC1L1Q9UHC9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
NPC1L1Q9UHC9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.45
NPC1L1Q9UHC9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
NPC1L1Q9UHC9 MIR3181-201ENST00000578512 73 ntBASIC30.39■■■□□ 2.45
NPC1L1Q9UHC9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.45
NPC1L1Q9UHC9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC30.39■■■□□ 2.45
NPC1L1Q9UHC9 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 AL353803.4-201ENST00000565882 1934 ntBASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
NPC1L1Q9UHC9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC30.37■■■□□ 2.45
NPC1L1Q9UHC9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
NPC1L1Q9UHC9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.37■■■□□ 2.45
NPC1L1Q9UHC9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.37■■■□□ 2.45
NPC1L1Q9UHC9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC30.37■■■□□ 2.45
NPC1L1Q9UHC9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC30.37■■■□□ 2.45
NPC1L1Q9UHC9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPC1L1Q9UHC9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 SYT6-210ENST00000641643 1587 ntBASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPC1L1Q9UHC9 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NPC1L1Q9UHC9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NPC1L1Q9UHC9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NPC1L1Q9UHC9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NPC1L1Q9UHC9 AC096631.2-201ENST00000436136 790 ntBASIC30.35■■■□□ 2.45
NPC1L1Q9UHC9 AC136469.2-201ENST00000623944 1028 ntBASIC30.35■■■□□ 2.45
NPC1L1Q9UHC9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC30.35■■■□□ 2.45
NPC1L1Q9UHC9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
NPC1L1Q9UHC9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
NPC1L1Q9UHC9 UNC93B3-201ENST00000308076 687 ntBASIC30.33■■■□□ 2.45
NPC1L1Q9UHC9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.33■■■□□ 2.45
NPC1L1Q9UHC9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
NPC1L1Q9UHC9 PKM-204ENST00000449901 2526 ntTSL 2 BASIC30.33■■■□□ 2.45
NPC1L1Q9UHC9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 AC106739.1-201ENST00000617035 715 ntBASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPC1L1Q9UHC9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 AL139246.5-201ENST00000606645 996 ntBASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 pRNA.6-201ENST00000610482 90 ntBASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 pRNA.5-201ENST00000612139 90 ntBASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 pRNA.11-201ENST00000618423 90 ntBASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 pRNA.13-201ENST00000619112 90 ntBASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPC1L1Q9UHC9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms