Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CLDND1Q9NY35 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.66■■□□□ 1.38
CLDND1Q9NY35 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.66■■□□□ 1.38
CLDND1Q9NY35 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.66■■□□□ 1.38
CLDND1Q9NY35 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC23.66■■□□□ 1.38
CLDND1Q9NY35 KRT18P61-201ENST00000585825 1298 ntBASIC23.66■■□□□ 1.38
CLDND1Q9NY35 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CLDND1Q9NY35 AC105233.4-201ENST00000642045 216 ntBASIC23.66■■□□□ 1.38
CLDND1Q9NY35 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CLDND1Q9NY35 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CLDND1Q9NY35 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 AP005435.1-201ENST00000529293 1178 ntBASIC23.65■■□□□ 1.38
CLDND1Q9NY35 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 GALNS-213ENST00000569433 723 ntTSL 3 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 GAS2L1P2-201ENST00000436355 1356 ntBASIC23.65■■□□□ 1.38
CLDND1Q9NY35 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
CLDND1Q9NY35 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CLDND1Q9NY35 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CLDND1Q9NY35 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.64■■□□□ 1.38
CLDND1Q9NY35 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CLDND1Q9NY35 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CLDND1Q9NY35 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.64■■□□□ 1.38
CLDND1Q9NY35 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.64■■□□□ 1.37
CLDND1Q9NY35 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CLDND1Q9NY35 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
CLDND1Q9NY35 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CLDND1Q9NY35 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.63■■□□□ 1.37
CLDND1Q9NY35 MAP2K4P1-201ENST00000438453 1195 ntBASIC23.63■■□□□ 1.37
CLDND1Q9NY35 AC006970.2-201ENST00000450065 779 ntBASIC23.63■■□□□ 1.37
CLDND1Q9NY35 AC092803.2-201ENST00000564287 1899 ntBASIC23.63■■□□□ 1.37
CLDND1Q9NY35 TMEM191A-211ENST00000637163 1067 ntBASIC23.63■■□□□ 1.37
CLDND1Q9NY35 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CLDND1Q9NY35 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 OR2I1P-207ENST00000453522 948 ntBASIC23.62■■□□□ 1.37
CLDND1Q9NY35 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 AL109923.1-201ENST00000618799 583 ntBASIC23.62■■□□□ 1.37
CLDND1Q9NY35 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CLDND1Q9NY35 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 AL161729.1-201ENST00000604104 1402 ntBASIC23.61■■□□□ 1.37
CLDND1Q9NY35 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLDND1Q9NY35 ALDH1A3-203ENST00000557963 1670 ntBASIC23.6■■□□□ 1.37
CLDND1Q9NY35 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 BID-214ENST00000617586 542 ntTSL 5 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLDND1Q9NY35 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
CLDND1Q9NY35 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLDND1Q9NY35 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CLDND1Q9NY35 AL499627.2-201ENST00000606283 725 ntBASIC23.59■■□□□ 1.37
CLDND1Q9NY35 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.59■■□□□ 1.37
CLDND1Q9NY35 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC23.59■■□□□ 1.37
CLDND1Q9NY35 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CLDND1Q9NY35 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CLDND1Q9NY35 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms