Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 U85056.1-201ENST00000616429 682 ntBASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 AC139795.1-202ENST00000500444 432 ntBASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 AC129492.7-201ENST00000622992 756 ntBASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP1AQ9HD42 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.14■□□□□ 0.66
CHMP1AQ9HD42 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP1AQ9HD42 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP1AQ9HD42 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 AC011551.1-201ENST00000614101 683 ntBASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP1AQ9HD42 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 HSD17B1P1-201ENST00000590052 955 ntBASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP1AQ9HD42 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 AL024507.2-201ENST00000606070 2574 ntBASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP1AQ9HD42 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 LINC00526-201ENST00000581067 1875 ntBASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP1AQ9HD42 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 AC127496.7-201ENST00000625110 1798 ntBASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 AC092068.2-201ENST00000590491 1708 ntBASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 KRT18P60-201ENST00000312876 1297 ntBASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 AC137767.1-201ENST00000602918 1920 ntBASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP1AQ9HD42 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.08■□□□□ 0.65
CHMP1AQ9HD42 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms