Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NR1H4Q96RI1 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NR1H4Q96RI1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.1■□□□□ 0.97
NR1H4Q96RI1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NR1H4Q96RI1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
NR1H4Q96RI1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
NR1H4Q96RI1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NR1H4Q96RI1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NR1H4Q96RI1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.08■□□□□ 0.97
NR1H4Q96RI1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NR1H4Q96RI1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
NR1H4Q96RI1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NR1H4Q96RI1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NR1H4Q96RI1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NR1H4Q96RI1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NR1H4Q96RI1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.07■□□□□ 0.96
NR1H4Q96RI1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NR1H4Q96RI1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.07■□□□□ 0.96
NR1H4Q96RI1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NR1H4Q96RI1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NR1H4Q96RI1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NR1H4Q96RI1 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR1H4Q96RI1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR1H4Q96RI1 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR1H4Q96RI1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.02■□□□□ 0.96
NR1H4Q96RI1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NR1H4Q96RI1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
NR1H4Q96RI1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
NR1H4Q96RI1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NR1H4Q96RI1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
NR1H4Q96RI1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR1H4Q96RI1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 257.2 ms