Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.1■□□□□ 0.97
COL21A1Q96P44 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
COL21A1Q96P44 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL21A1Q96P44 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL21A1Q96P44 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL21A1Q96P44 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
COL21A1Q96P44 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.1■□□□□ 0.97
COL21A1Q96P44 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.1■□□□□ 0.97
COL21A1Q96P44 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.1■□□□□ 0.97
COL21A1Q96P44 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
COL21A1Q96P44 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
COL21A1Q96P44 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL21A1Q96P44 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL21A1Q96P44 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.09■□□□□ 0.97
COL21A1Q96P44 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL21A1Q96P44 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.09■□□□□ 0.97
COL21A1Q96P44 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.09■□□□□ 0.97
COL21A1Q96P44 UNC93B8-201ENST00000511903 705 ntBASIC21.09■□□□□ 0.97
COL21A1Q96P44 AC010997.5-201ENST00000609182 354 ntBASIC21.09■□□□□ 0.97
COL21A1Q96P44 MIR6722-201ENST00000617286 78 ntBASIC21.09■□□□□ 0.97
COL21A1Q96P44 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL21A1Q96P44 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL21A1Q96P44 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL21A1Q96P44 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
COL21A1Q96P44 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL21A1Q96P44 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL21A1Q96P44 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL21A1Q96P44 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL21A1Q96P44 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL21A1Q96P44 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.08■□□□□ 0.97
COL21A1Q96P44 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL21A1Q96P44 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.08■□□□□ 0.96
COL21A1Q96P44 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL21A1Q96P44 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL21A1Q96P44 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.07■□□□□ 0.96
COL21A1Q96P44 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL21A1Q96P44 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
COL21A1Q96P44 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL21A1Q96P44 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL21A1Q96P44 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL21A1Q96P44 DUSP8P3-201ENST00000399571 1760 ntBASIC21.07■□□□□ 0.96
COL21A1Q96P44 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL21A1Q96P44 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL21A1Q96P44 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL21A1Q96P44 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL21A1Q96P44 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL21A1Q96P44 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL21A1Q96P44 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL21A1Q96P44 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.06■□□□□ 0.96
COL21A1Q96P44 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL21A1Q96P44 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL21A1Q96P44 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL21A1Q96P44 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
COL21A1Q96P44 KRT16P3-201ENST00000439127 1283 ntBASIC21.05■□□□□ 0.96
COL21A1Q96P44 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.05■□□□□ 0.96
COL21A1Q96P44 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL21A1Q96P44 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL21A1Q96P44 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
COL21A1Q96P44 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
COL21A1Q96P44 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL21A1Q96P44 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.04■□□□□ 0.96
COL21A1Q96P44 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.04■□□□□ 0.96
COL21A1Q96P44 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.04■□□□□ 0.96
COL21A1Q96P44 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.04■□□□□ 0.96
COL21A1Q96P44 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.04■□□□□ 0.96
COL21A1Q96P44 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
COL21A1Q96P44 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.04■□□□□ 0.96
COL21A1Q96P44 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL21A1Q96P44 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
COL21A1Q96P44 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
COL21A1Q96P44 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.03■□□□□ 0.96
COL21A1Q96P44 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COL21A1Q96P44 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL21A1Q96P44 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL21A1Q96P44 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
COL21A1Q96P44 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
COL21A1Q96P44 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.03■□□□□ 0.96
COL21A1Q96P44 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL21A1Q96P44 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL21A1Q96P44 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL21A1Q96P44 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL21A1Q96P44 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.02■□□□□ 0.96
COL21A1Q96P44 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL21A1Q96P44 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms