Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
BRF1Q92994 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
BRF1Q92994 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.41■■□□□ 1.82
BRF1Q92994 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.41■■□□□ 1.82
BRF1Q92994 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
BRF1Q92994 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
BRF1Q92994 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
BRF1Q92994 AL353803.4-201ENST00000565882 1934 ntBASIC26.41■■□□□ 1.82
BRF1Q92994 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
BRF1Q92994 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
BRF1Q92994 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
BRF1Q92994 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
BRF1Q92994 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
BRF1Q92994 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
BRF1Q92994 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
BRF1Q92994 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.4■■□□□ 1.82
BRF1Q92994 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
BRF1Q92994 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
BRF1Q92994 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
BRF1Q92994 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC26.39■■□□□ 1.82
BRF1Q92994 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.39■■□□□ 1.82
BRF1Q92994 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC26.39■■□□□ 1.82
BRF1Q92994 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.39■■□□□ 1.82
BRF1Q92994 KRT16P3-201ENST00000439127 1283 ntBASIC26.39■■□□□ 1.82
BRF1Q92994 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
BRF1Q92994 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.39■■□□□ 1.82
BRF1Q92994 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
BRF1Q92994 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.39■■□□□ 1.81
BRF1Q92994 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC26.39■■□□□ 1.81
BRF1Q92994 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
BRF1Q92994 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.38■■□□□ 1.81
BRF1Q92994 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
BRF1Q92994 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
BRF1Q92994 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BRF1Q92994 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
BRF1Q92994 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.38■■□□□ 1.81
BRF1Q92994 MIR6724-1-201ENST00000616420 92 ntBASIC26.38■■□□□ 1.81
BRF1Q92994 MIR6724-2-201ENST00000616483 92 ntBASIC26.38■■□□□ 1.81
BRF1Q92994 MIR6724-4-201ENST00000617390 92 ntBASIC26.38■■□□□ 1.81
BRF1Q92994 MIR6724-3-201ENST00000622482 92 ntBASIC26.38■■□□□ 1.81
BRF1Q92994 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRF1Q92994 AC144652.1-201ENST00000609974 1624 ntBASIC26.37■■□□□ 1.81
BRF1Q92994 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRF1Q92994 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRF1Q92994 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.37■■□□□ 1.81
BRF1Q92994 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
BRF1Q92994 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRF1Q92994 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRF1Q92994 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.37■■□□□ 1.81
BRF1Q92994 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
BRF1Q92994 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
BRF1Q92994 AC009102.2-201ENST00000606772 1639 ntBASIC26.36■■□□□ 1.81
BRF1Q92994 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
BRF1Q92994 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
BRF1Q92994 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC26.36■■□□□ 1.81
BRF1Q92994 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
BRF1Q92994 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
BRF1Q92994 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
BRF1Q92994 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
BRF1Q92994 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.35■■□□□ 1.81
BRF1Q92994 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BRF1Q92994 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BRF1Q92994 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.35■■□□□ 1.81
BRF1Q92994 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
BRF1Q92994 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
BRF1Q92994 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
BRF1Q92994 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC26.34■■□□□ 1.81
BRF1Q92994 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
BRF1Q92994 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.34■■□□□ 1.81
BRF1Q92994 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
BRF1Q92994 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
BRF1Q92994 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.33■■□□□ 1.81
BRF1Q92994 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.33■■□□□ 1.81
BRF1Q92994 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC26.33■■□□□ 1.81
BRF1Q92994 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
BRF1Q92994 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
BRF1Q92994 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
BRF1Q92994 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC26.32■■□□□ 1.8
BRF1Q92994 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.32■■□□□ 1.8
BRF1Q92994 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BRF1Q92994 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.32■■□□□ 1.8
BRF1Q92994 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
BRF1Q92994 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
BRF1Q92994 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC26.32■■□□□ 1.8
BRF1Q92994 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BRF1Q92994 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
BRF1Q92994 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.32■■□□□ 1.8
BRF1Q92994 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
BRF1Q92994 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
BRF1Q92994 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRF1Q92994 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRF1Q92994 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC26.31■■□□□ 1.8
BRF1Q92994 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
BRF1Q92994 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRF1Q92994 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRF1Q92994 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.31■■□□□ 1.8
BRF1Q92994 C1orf229-201ENST00000623686 2258 ntBASIC26.31■■□□□ 1.8
BRF1Q92994 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
BRF1Q92994 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
BRF1Q92994 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms