Protein–RNA interactions for Protein: Q8IUD6

RNF135, E3 ubiquitin-protein ligase RNF135, humanhuman

Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF135Q8IUD6 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 NTF6G-201ENST00000591094 616 ntBASIC23.73■■□□□ 1.39
RNF135Q8IUD6 AL358852.1-201ENST00000623174 1268 ntBASIC23.73■■□□□ 1.39
RNF135Q8IUD6 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RNF135Q8IUD6 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 C17orf82-201ENST00000623772 1530 ntBASIC23.72■■□□□ 1.39
RNF135Q8IUD6 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RNF135Q8IUD6 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
RNF135Q8IUD6 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.71■■□□□ 1.39
RNF135Q8IUD6 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.71■■□□□ 1.39
RNF135Q8IUD6 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.71■■□□□ 1.39
RNF135Q8IUD6 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RNF135Q8IUD6 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RNF135Q8IUD6 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RNF135Q8IUD6 AC138932.3-201ENST00000567634 1902 ntBASIC23.71■■□□□ 1.39
RNF135Q8IUD6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
RNF135Q8IUD6 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
RNF135Q8IUD6 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RNF135Q8IUD6 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RNF135Q8IUD6 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.7■■□□□ 1.38
RNF135Q8IUD6 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RNF135Q8IUD6 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
RNF135Q8IUD6 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.69■■□□□ 1.38
RNF135Q8IUD6 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RNF135Q8IUD6 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
RNF135Q8IUD6 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RNF135Q8IUD6 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
RNF135Q8IUD6 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RNF135Q8IUD6 CCDC92B-201ENST00000575506 885 ntBASIC23.69■■□□□ 1.38
RNF135Q8IUD6 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RNF135Q8IUD6 ABHD17AP1-201ENST00000358206 933 ntBASIC23.68■■□□□ 1.38
RNF135Q8IUD6 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.68■■□□□ 1.38
RNF135Q8IUD6 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.68■■□□□ 1.38
RNF135Q8IUD6 MIR6084-201ENST00000622012 110 ntBASIC23.68■■□□□ 1.38
RNF135Q8IUD6 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
RNF135Q8IUD6 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RNF135Q8IUD6 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RNF135Q8IUD6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RNF135Q8IUD6 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 AC142381.3-201ENST00000568208 1670 ntBASIC23.67■■□□□ 1.38
RNF135Q8IUD6 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 AC009086.3-201ENST00000623486 1008 ntBASIC23.67■■□□□ 1.38
RNF135Q8IUD6 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RNF135Q8IUD6 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RNF135Q8IUD6 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
RNF135Q8IUD6 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.66■■□□□ 1.38
RNF135Q8IUD6 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
RNF135Q8IUD6 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RNF135Q8IUD6 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RNF135Q8IUD6 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RNF135Q8IUD6 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RNF135Q8IUD6 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.65■■□□□ 1.38
RNF135Q8IUD6 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.65■■□□□ 1.38
RNF135Q8IUD6 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.65■■□□□ 1.38
RNF135Q8IUD6 MIR6089-201ENST00000616698 64 ntBASIC23.65■■□□□ 1.38
RNF135Q8IUD6 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RNF135Q8IUD6 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
RNF135Q8IUD6 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
RNF135Q8IUD6 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.64■■□□□ 1.37
RNF135Q8IUD6 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.64■■□□□ 1.37
RNF135Q8IUD6 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.64■■□□□ 1.37
RNF135Q8IUD6 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.64■■□□□ 1.37
RNF135Q8IUD6 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RNF135Q8IUD6 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RNF135Q8IUD6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 KRT18P14-201ENST00000534205 1250 ntBASIC23.63■■□□□ 1.37
RNF135Q8IUD6 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
RNF135Q8IUD6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
RNF135Q8IUD6 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms