Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
NPHP3Q7Z494 AC137761.2-201ENST00000561729 223 ntBASIC30.9■■■□□ 2.54
NPHP3Q7Z494 AC145350.3-201ENST00000569033 163 ntBASIC30.9■■■□□ 2.54
NPHP3Q7Z494 ALDH1A3-203ENST00000557963 1670 ntBASIC30.9■■■□□ 2.54
NPHP3Q7Z494 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.89■■■□□ 2.54
NPHP3Q7Z494 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.53
NPHP3Q7Z494 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC30.88■■■□□ 2.53
NPHP3Q7Z494 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
NPHP3Q7Z494 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 HSCB-202ENST00000398941 955 ntTSL 2 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 AC026185.1-201ENST00000445748 174 ntBASIC30.87■■■□□ 2.53
NPHP3Q7Z494 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 PPP1R14BP3-201ENST00000509033 445 ntBASIC30.87■■■□□ 2.53
NPHP3Q7Z494 AP005435.1-201ENST00000529293 1178 ntBASIC30.87■■■□□ 2.53
NPHP3Q7Z494 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 AC105233.4-201ENST00000642045 216 ntBASIC30.87■■■□□ 2.53
NPHP3Q7Z494 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC30.87■■■□□ 2.53
NPHP3Q7Z494 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP3Q7Z494 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP3Q7Z494 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC30.86■■■□□ 2.53
NPHP3Q7Z494 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC30.86■■■□□ 2.53
NPHP3Q7Z494 GALNS-213ENST00000569433 723 ntTSL 3 BASIC30.86■■■□□ 2.53
NPHP3Q7Z494 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP3Q7Z494 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC30.86■■■□□ 2.53
NPHP3Q7Z494 ESRRAP2-201ENST00000418437 1549 ntBASIC30.85■■■□□ 2.53
NPHP3Q7Z494 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP3Q7Z494 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP3Q7Z494 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC30.85■■■□□ 2.53
NPHP3Q7Z494 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC30.85■■■□□ 2.53
NPHP3Q7Z494 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 STX7-201ENST00000367937 1090 ntTSL 5 BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP3Q7Z494 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.83■■■□□ 2.53
NPHP3Q7Z494 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP3Q7Z494 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP3Q7Z494 MAP2K4P1-201ENST00000438453 1195 ntBASIC30.83■■■□□ 2.53
NPHP3Q7Z494 DBI-210ENST00000542275 757 ntTSL 5 BASIC30.83■■■□□ 2.53
NPHP3Q7Z494 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP3Q7Z494 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP3Q7Z494 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC30.82■■■□□ 2.52
NPHP3Q7Z494 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP3Q7Z494 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP3Q7Z494 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP3Q7Z494 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC30.82■■■□□ 2.52
NPHP3Q7Z494 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC30.81■■■□□ 2.52
NPHP3Q7Z494 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC30.81■■■□□ 2.52
NPHP3Q7Z494 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC30.81■■■□□ 2.52
NPHP3Q7Z494 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
NPHP3Q7Z494 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP3Q7Z494 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP3Q7Z494 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP3Q7Z494 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC30.8■■■□□ 2.52
NPHP3Q7Z494 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP3Q7Z494 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC30.8■■■□□ 2.52
NPHP3Q7Z494 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP3Q7Z494 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 AL355802.2-201ENST00000402069 882 ntBASIC30.79■■■□□ 2.52
NPHP3Q7Z494 MFF-208ENST00000409616 1247 ntTSL 5 BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP3Q7Z494 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 TPRG1LP1-201ENST00000598702 760 ntBASIC30.78■■■□□ 2.52
NPHP3Q7Z494 BID-214ENST00000617586 542 ntTSL 5 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms