Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 CEBPA-AS1-201ENST00000592982 2198 ntBASIC15.79■□□□□ 0.12
CSMD3Q7Z407 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 NCF1B-203ENST00000435988 1254 ntBASIC15.79■□□□□ 0.12
CSMD3Q7Z407 AC026185.1-201ENST00000445748 174 ntBASIC15.79■□□□□ 0.12
CSMD3Q7Z407 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 TPRG1LP1-201ENST00000598702 760 ntBASIC15.79■□□□□ 0.12
CSMD3Q7Z407 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 PPP1R14BP3-201ENST00000509033 445 ntBASIC15.79■□□□□ 0.12
CSMD3Q7Z407 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 STK32C-205ENST00000456004 607 ntTSL 2 BASIC15.79■□□□□ 0.12
CSMD3Q7Z407 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 AC016769.1-201ENST00000409132 1010 ntBASIC15.78■□□□□ 0.12
CSMD3Q7Z407 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 AC142086.2-201ENST00000569753 217 ntBASIC15.78■□□□□ 0.12
CSMD3Q7Z407 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 AC133637.1-201ENST00000624115 1537 ntBASIC15.78■□□□□ 0.12
CSMD3Q7Z407 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSMD3Q7Z407 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSMD3Q7Z407 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 SHF-207ENST00000560540 2062 ntTSL 5 BASIC15.77■□□□□ 0.11
CSMD3Q7Z407 AL022069.1-201ENST00000568025 1636 ntBASIC15.76■□□□□ 0.11
CSMD3Q7Z407 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 AC091060.1-201ENST00000623524 1766 ntBASIC15.76■□□□□ 0.11
CSMD3Q7Z407 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 AC135731.1-201ENST00000569415 2548 ntBASIC15.76■□□□□ 0.11
CSMD3Q7Z407 DBI-210ENST00000542275 757 ntTSL 5 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 MIR4651-201ENST00000582622 73 ntBASIC15.76■□□□□ 0.11
CSMD3Q7Z407 AL499627.2-201ENST00000606283 725 ntBASIC15.76■□□□□ 0.11
CSMD3Q7Z407 WT1-AS_3.1-201ENST00000613262 234 ntBASIC15.76■□□□□ 0.11
CSMD3Q7Z407 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CSMD3Q7Z407 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 AL355802.2-201ENST00000402069 882 ntBASIC15.75■□□□□ 0.11
CSMD3Q7Z407 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 MIR663A-201ENST00000385250 93 ntBASIC15.75■□□□□ 0.11
CSMD3Q7Z407 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 AC092803.2-201ENST00000564287 1899 ntBASIC15.75■□□□□ 0.11
CSMD3Q7Z407 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.75■□□□□ 0.11
CSMD3Q7Z407 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC15.74■□□□□ 0.11
CSMD3Q7Z407 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CSMD3Q7Z407 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms