Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF404Q494X3 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF404Q494X3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF404Q494X3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF404Q494X3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF404Q494X3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF404Q494X3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
ZNF404Q494X3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 AL121603.2-201ENST00000557373 2117 ntBASIC20.2■□□□□ 0.82
ZNF404Q494X3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.2■□□□□ 0.82
ZNF404Q494X3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 MIR6765-201ENST00000614092 87 ntBASIC20.2■□□□□ 0.82
ZNF404Q494X3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
ZNF404Q494X3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
ZNF404Q494X3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF404Q494X3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF404Q494X3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
ZNF404Q494X3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF404Q494X3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF404Q494X3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
ZNF404Q494X3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF404Q494X3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF404Q494X3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.19■□□□□ 0.82
ZNF404Q494X3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.19■□□□□ 0.82
ZNF404Q494X3 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF404Q494X3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
ZNF404Q494X3 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF404Q494X3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF404Q494X3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF404Q494X3 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF404Q494X3 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF404Q494X3 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF404Q494X3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF404Q494X3 DUX4L18-201ENST00000553347 1267 ntBASIC20.18■□□□□ 0.82
ZNF404Q494X3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF404Q494X3 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
ZNF404Q494X3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ZNF404Q494X3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.17■□□□□ 0.82
ZNF404Q494X3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.17■□□□□ 0.82
ZNF404Q494X3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF404Q494X3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
ZNF404Q494X3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
ZNF404Q494X3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF404Q494X3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF404Q494X3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF404Q494X3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
ZNF404Q494X3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF404Q494X3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.16■□□□□ 0.82
ZNF404Q494X3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF404Q494X3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF404Q494X3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF404Q494X3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF404Q494X3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
ZNF404Q494X3 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.15■□□□□ 0.82
ZNF404Q494X3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF404Q494X3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF404Q494X3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF404Q494X3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF404Q494X3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
ZNF404Q494X3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF404Q494X3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF404Q494X3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF404Q494X3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF404Q494X3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF404Q494X3 ESRRAP2-201ENST00000418437 1549 ntBASIC20.14■□□□□ 0.81
ZNF404Q494X3 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF404Q494X3 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms