Protein–RNA interactions for Protein: Q3ZCT1

ZNF260, Zinc finger protein 260, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF260Q3ZCT1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.06■□□□□ 0.64
ZNF260Q3ZCT1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 LONRF2P2-201ENST00000439212 571 ntBASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 AC011551.1-201ENST00000614101 683 ntBASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF260Q3ZCT1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 MIR6765-201ENST00000614092 87 ntBASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.04■□□□□ 0.64
ZNF260Q3ZCT1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 AC139530.1-201ENST00000575312 1977 ntBASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
ZNF260Q3ZCT1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF260Q3ZCT1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF260Q3ZCT1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF260Q3ZCT1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF260Q3ZCT1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF260Q3ZCT1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.02■□□□□ 0.64
ZNF260Q3ZCT1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
ZNF260Q3ZCT1 AC092053.2-201ENST00000640557 1818 ntBASIC19.02■□□□□ 0.63
ZNF260Q3ZCT1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF260Q3ZCT1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF260Q3ZCT1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 AC012354.3-201ENST00000623734 483 ntBASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF260Q3ZCT1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 DUX4L9-201ENST00000449051 1259 ntBASIC19■□□□□ 0.63
ZNF260Q3ZCT1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
ZNF260Q3ZCT1 C11orf96-202ENST00000528572 1834 ntBASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms