Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.8■□□□□ 0.92
RFX4Q33E94 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
RFX4Q33E94 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFX4Q33E94 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFX4Q33E94 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
RFX4Q33E94 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFX4Q33E94 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.79■□□□□ 0.92
RFX4Q33E94 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RFX4Q33E94 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.79■□□□□ 0.92
RFX4Q33E94 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFX4Q33E94 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFX4Q33E94 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFX4Q33E94 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 DUX4L9-201ENST00000449051 1259 ntBASIC20.78■□□□□ 0.92
RFX4Q33E94 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.78■□□□□ 0.92
RFX4Q33E94 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX4Q33E94 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
RFX4Q33E94 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
RFX4Q33E94 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
RFX4Q33E94 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFX4Q33E94 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFX4Q33E94 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
RFX4Q33E94 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RFX4Q33E94 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFX4Q33E94 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.77■□□□□ 0.92
RFX4Q33E94 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFX4Q33E94 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFX4Q33E94 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RFX4Q33E94 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.91
RFX4Q33E94 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFX4Q33E94 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
RFX4Q33E94 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.76■□□□□ 0.91
RFX4Q33E94 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFX4Q33E94 AL022069.1-201ENST00000568025 1636 ntBASIC20.76■□□□□ 0.91
RFX4Q33E94 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RFX4Q33E94 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.76■□□□□ 0.91
RFX4Q33E94 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFX4Q33E94 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
RFX4Q33E94 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
RFX4Q33E94 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFX4Q33E94 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
RFX4Q33E94 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.75■□□□□ 0.91
RFX4Q33E94 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
RFX4Q33E94 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.75■□□□□ 0.91
RFX4Q33E94 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
RFX4Q33E94 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
RFX4Q33E94 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.75■□□□□ 0.91
RFX4Q33E94 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.75■□□□□ 0.91
RFX4Q33E94 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX4Q33E94 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX4Q33E94 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RFX4Q33E94 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
RFX4Q33E94 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
RFX4Q33E94 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX4Q33E94 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
RFX4Q33E94 LONRF2P2-201ENST00000439212 571 ntBASIC20.74■□□□□ 0.91
RFX4Q33E94 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.74■□□□□ 0.91
RFX4Q33E94 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX4Q33E94 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX4Q33E94 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX4Q33E94 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
RFX4Q33E94 AC092053.2-201ENST00000640557 1818 ntBASIC20.74■□□□□ 0.91
RFX4Q33E94 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.73■□□□□ 0.91
RFX4Q33E94 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
RFX4Q33E94 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RFX4Q33E94 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RFX4Q33E94 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.73■□□□□ 0.91
RFX4Q33E94 RARRES2P2-201ENST00000394842 485 ntBASIC20.73■□□□□ 0.91
RFX4Q33E94 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.73■□□□□ 0.91
RFX4Q33E94 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.73■□□□□ 0.91
RFX4Q33E94 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RFX4Q33E94 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RFX4Q33E94 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
RFX4Q33E94 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RFX4Q33E94 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.72■□□□□ 0.91
RFX4Q33E94 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RFX4Q33E94 C11orf96-202ENST00000528572 1834 ntBASIC20.72■□□□□ 0.91
RFX4Q33E94 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RFX4Q33E94 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX4Q33E94 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RFX4Q33E94 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX4Q33E94 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
RFX4Q33E94 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX4Q33E94 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RFX4Q33E94 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RFX4Q33E94 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms