Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL28A1Q2UY09 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 MIR6084-201ENST00000622012 110 ntBASIC21.47■■□□□ 1.03
COL28A1Q2UY09 AL358852.1-201ENST00000623174 1268 ntBASIC21.47■■□□□ 1.03
COL28A1Q2UY09 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 TSPY26P-201ENST00000476365 1326 ntBASIC21.47■■□□□ 1.03
COL28A1Q2UY09 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
COL28A1Q2UY09 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 AC104771.1-201ENST00000603335 964 ntBASIC21.46■■□□□ 1.03
COL28A1Q2UY09 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL28A1Q2UY09 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 AL355802.2-201ENST00000402069 882 ntBASIC21.45■■□□□ 1.02
COL28A1Q2UY09 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL28A1Q2UY09 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 AC142381.3-201ENST00000568208 1670 ntBASIC21.44■■□□□ 1.02
COL28A1Q2UY09 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL28A1Q2UY09 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL28A1Q2UY09 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
COL28A1Q2UY09 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
COL28A1Q2UY09 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL28A1Q2UY09 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.43■■□□□ 1.02
COL28A1Q2UY09 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL28A1Q2UY09 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL28A1Q2UY09 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL28A1Q2UY09 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL28A1Q2UY09 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL28A1Q2UY09 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL28A1Q2UY09 KRT18P14-201ENST00000534205 1250 ntBASIC21.42■■□□□ 1.02
COL28A1Q2UY09 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL28A1Q2UY09 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms