Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.37■■□□□ 1.33
PTPN9P43378 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.36■■□□□ 1.33
PTPN9P43378 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTPN9P43378 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTPN9P43378 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTPN9P43378 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTPN9P43378 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
PTPN9P43378 LINC01529-204ENST00000636474 1715 ntBASIC23.36■■□□□ 1.33
PTPN9P43378 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTPN9P43378 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.35■■□□□ 1.33
PTPN9P43378 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
PTPN9P43378 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.35■■□□□ 1.33
PTPN9P43378 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PTPN9P43378 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PTPN9P43378 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.35■■□□□ 1.33
PTPN9P43378 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.35■■□□□ 1.33
PTPN9P43378 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
PTPN9P43378 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PTPN9P43378 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.35■■□□□ 1.33
PTPN9P43378 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTPN9P43378 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
PTPN9P43378 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
PTPN9P43378 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTPN9P43378 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PTPN9P43378 DUX4L4-201ENST00000566884 1269 ntBASIC23.34■■□□□ 1.33
PTPN9P43378 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTPN9P43378 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.34■■□□□ 1.33
PTPN9P43378 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTPN9P43378 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.34■■□□□ 1.33
PTPN9P43378 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTPN9P43378 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.34■■□□□ 1.33
PTPN9P43378 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTPN9P43378 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
PTPN9P43378 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
PTPN9P43378 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.33■■□□□ 1.33
PTPN9P43378 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
PTPN9P43378 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PTPN9P43378 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PTPN9P43378 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
PTPN9P43378 AL512631.2-201ENST00000604634 923 ntBASIC23.33■■□□□ 1.33
PTPN9P43378 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.33■■□□□ 1.33
PTPN9P43378 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
PTPN9P43378 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.33■■□□□ 1.32
PTPN9P43378 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PTPN9P43378 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
PTPN9P43378 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
PTPN9P43378 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.32■■□□□ 1.32
PTPN9P43378 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
PTPN9P43378 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.32■■□□□ 1.32
PTPN9P43378 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
PTPN9P43378 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.31■■□□□ 1.32
PTPN9P43378 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.31■■□□□ 1.32
PTPN9P43378 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.31■■□□□ 1.32
PTPN9P43378 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PTPN9P43378 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.31■■□□□ 1.32
PTPN9P43378 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PTPN9P43378 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTPN9P43378 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.3■■□□□ 1.32
PTPN9P43378 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.3■■□□□ 1.32
PTPN9P43378 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTPN9P43378 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.3■■□□□ 1.32
PTPN9P43378 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PTPN9P43378 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.3■■□□□ 1.32
PTPN9P43378 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PTPN9P43378 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.3■■□□□ 1.32
PTPN9P43378 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.3■■□□□ 1.32
PTPN9P43378 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.3■■□□□ 1.32
PTPN9P43378 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTPN9P43378 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.3■■□□□ 1.32
PTPN9P43378 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTPN9P43378 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.3■■□□□ 1.32
PTPN9P43378 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTPN9P43378 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTPN9P43378 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.29■■□□□ 1.32
PTPN9P43378 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.29■■□□□ 1.32
PTPN9P43378 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.29■■□□□ 1.32
PTPN9P43378 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.29■■□□□ 1.32
PTPN9P43378 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTPN9P43378 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.29■■□□□ 1.32
PTPN9P43378 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTPN9P43378 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.28■■□□□ 1.32
PTPN9P43378 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PTPN9P43378 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
PTPN9P43378 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.28■■□□□ 1.32
PTPN9P43378 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTPN9P43378 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTPN9P43378 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.28■■□□□ 1.32
PTPN9P43378 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.28■■□□□ 1.32
PTPN9P43378 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.28■■□□□ 1.32
PTPN9P43378 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PTPN9P43378 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PTPN9P43378 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.27■■□□□ 1.32
PTPN9P43378 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.27■■□□□ 1.32
PTPN9P43378 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
PTPN9P43378 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PTPN9P43378 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PTPN9P43378 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
PTPN9P43378 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PTPN9P43378 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.27■■□□□ 1.32
PTPN9P43378 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms