Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SCN1AP35498 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
SCN1AP35498 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SCN1AP35498 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SCN1AP35498 AL138724.1-201ENST00000606771 1088 ntBASIC24.03■■□□□ 1.44
SCN1AP35498 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.03■■□□□ 1.44
SCN1AP35498 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SCN1AP35498 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
SCN1AP35498 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SCN1AP35498 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
SCN1AP35498 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SCN1AP35498 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.02■■□□□ 1.44
SCN1AP35498 AF213884.3-201ENST00000563833 479 ntBASIC24.02■■□□□ 1.44
SCN1AP35498 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.02■■□□□ 1.44
SCN1AP35498 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.02■■□□□ 1.44
SCN1AP35498 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SCN1AP35498 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
SCN1AP35498 EDA-201ENST00000338901 1233 ntBASIC24.01■■□□□ 1.43
SCN1AP35498 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
SCN1AP35498 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.01■■□□□ 1.43
SCN1AP35498 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SCN1AP35498 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SCN1AP35498 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SCN1AP35498 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.01■■□□□ 1.43
SCN1AP35498 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.01■■□□□ 1.43
SCN1AP35498 SLC47A1P1-202ENST00000449666 945 ntBASIC24.01■■□□□ 1.43
SCN1AP35498 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.01■■□□□ 1.43
SCN1AP35498 MIR4767-201ENST00000582827 78 ntBASIC24.01■■□□□ 1.43
SCN1AP35498 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SCN1AP35498 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC24■■□□□ 1.43
SCN1AP35498 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SCN1AP35498 AC005837.3-201ENST00000612163 286 ntBASIC24■■□□□ 1.43
SCN1AP35498 GRAMD4P4-201ENST00000613563 1115 ntBASIC24■■□□□ 1.43
SCN1AP35498 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24■■□□□ 1.43
SCN1AP35498 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC24■■□□□ 1.43
SCN1AP35498 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC24■■□□□ 1.43
SCN1AP35498 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24■■□□□ 1.43
SCN1AP35498 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SCN1AP35498 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SCN1AP35498 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.99■■□□□ 1.43
SCN1AP35498 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.99■■□□□ 1.43
SCN1AP35498 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.99■■□□□ 1.43
SCN1AP35498 MIR3181-201ENST00000578512 73 ntBASIC23.99■■□□□ 1.43
SCN1AP35498 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SCN1AP35498 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SCN1AP35498 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.99■■□□□ 1.43
SCN1AP35498 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SCN1AP35498 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.98■■□□□ 1.43
SCN1AP35498 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.98■■□□□ 1.43
SCN1AP35498 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SCN1AP35498 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SCN1AP35498 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.98■■□□□ 1.43
SCN1AP35498 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
SCN1AP35498 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SCN1AP35498 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SCN1AP35498 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
SCN1AP35498 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.98■■□□□ 1.43
SCN1AP35498 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.98■■□□□ 1.43
SCN1AP35498 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SCN1AP35498 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SCN1AP35498 AC092171.4-201ENST00000609130 632 ntBASIC23.97■■□□□ 1.43
SCN1AP35498 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SCN1AP35498 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SCN1AP35498 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.97■■□□□ 1.43
SCN1AP35498 ZNRF2P3-201ENST00000424200 374 ntBASIC23.96■■□□□ 1.43
SCN1AP35498 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.96■■□□□ 1.43
SCN1AP35498 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
SCN1AP35498 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
SCN1AP35498 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SCN1AP35498 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
SCN1AP35498 AC136469.2-201ENST00000623944 1028 ntBASIC23.96■■□□□ 1.43
SCN1AP35498 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.43
SCN1AP35498 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.43
SCN1AP35498 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.43
SCN1AP35498 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SCN1AP35498 MIR939-201ENST00000401314 82 ntBASIC23.95■■□□□ 1.42
SCN1AP35498 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
SCN1AP35498 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
SCN1AP35498 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.95■■□□□ 1.42
SCN1AP35498 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
SCN1AP35498 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
SCN1AP35498 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
SCN1AP35498 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
SCN1AP35498 AC142381.2-201ENST00000566120 298 ntBASIC23.94■■□□□ 1.42
SCN1AP35498 pRNA.6-201ENST00000610482 90 ntBASIC23.94■■□□□ 1.42
SCN1AP35498 pRNA.5-201ENST00000612139 90 ntBASIC23.94■■□□□ 1.42
SCN1AP35498 pRNA.11-201ENST00000618423 90 ntBASIC23.94■■□□□ 1.42
SCN1AP35498 pRNA.13-201ENST00000619112 90 ntBASIC23.94■■□□□ 1.42
SCN1AP35498 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
SCN1AP35498 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
SCN1AP35498 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SCN1AP35498 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
SCN1AP35498 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.94■■□□□ 1.42
SCN1AP35498 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
SCN1AP35498 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.93■■□□□ 1.42
SCN1AP35498 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.93■■□□□ 1.42
SCN1AP35498 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SCN1AP35498 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.93■■□□□ 1.42
SCN1AP35498 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SCN1AP35498 AC010525.1-201ENST00000585559 441 ntBASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms