Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCD3P28288 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCD3P28288 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.65■□□□□ 0.9
ABCD3P28288 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCD3P28288 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCD3P28288 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCD3P28288 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.65■□□□□ 0.9
ABCD3P28288 FP325331.1-202ENST00000623531 1380 ntBASIC20.65■□□□□ 0.9
ABCD3P28288 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.65■□□□□ 0.9
ABCD3P28288 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.65■□□□□ 0.9
ABCD3P28288 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.65■□□□□ 0.9
ABCD3P28288 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ABCD3P28288 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.65■□□□□ 0.9
ABCD3P28288 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCD3P28288 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ABCD3P28288 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
ABCD3P28288 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ABCD3P28288 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ABCD3P28288 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ABCD3P28288 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ABCD3P28288 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.64■□□□□ 0.89
ABCD3P28288 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.64■□□□□ 0.89
ABCD3P28288 AC092171.4-201ENST00000609130 632 ntBASIC20.64■□□□□ 0.89
ABCD3P28288 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.64■□□□□ 0.89
ABCD3P28288 AC092068.2-201ENST00000590491 1708 ntBASIC20.64■□□□□ 0.89
ABCD3P28288 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ABCD3P28288 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ABCD3P28288 LINC01529-204ENST00000636474 1715 ntBASIC20.63■□□□□ 0.89
ABCD3P28288 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ABCD3P28288 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.63■□□□□ 0.89
ABCD3P28288 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.63■□□□□ 0.89
ABCD3P28288 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ABCD3P28288 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ABCD3P28288 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
ABCD3P28288 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ABCD3P28288 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.62■□□□□ 0.89
ABCD3P28288 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ABCD3P28288 AC009086.3-201ENST00000623486 1008 ntBASIC20.62■□□□□ 0.89
ABCD3P28288 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
ABCD3P28288 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
ABCD3P28288 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.62■□□□□ 0.89
ABCD3P28288 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.61■□□□□ 0.89
ABCD3P28288 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ABCD3P28288 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ABCD3P28288 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ABCD3P28288 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.61■□□□□ 0.89
ABCD3P28288 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ABCD3P28288 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ABCD3P28288 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
ABCD3P28288 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ABCD3P28288 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.61■□□□□ 0.89
ABCD3P28288 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.61■□□□□ 0.89
ABCD3P28288 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
ABCD3P28288 AL353803.4-201ENST00000565882 1934 ntBASIC20.61■□□□□ 0.89
ABCD3P28288 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
ABCD3P28288 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCD3P28288 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
ABCD3P28288 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
ABCD3P28288 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.6■□□□□ 0.89
ABCD3P28288 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.6■□□□□ 0.89
ABCD3P28288 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCD3P28288 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ABCD3P28288 AC006455.2-201ENST00000429931 906 ntBASIC20.6■□□□□ 0.89
ABCD3P28288 DUX4L19-201ENST00000557448 1267 ntBASIC20.6■□□□□ 0.89
ABCD3P28288 DUX4L4-201ENST00000566884 1269 ntBASIC20.6■□□□□ 0.89
ABCD3P28288 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.6■□□□□ 0.89
ABCD3P28288 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.6■□□□□ 0.89
ABCD3P28288 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCD3P28288 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCD3P28288 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ABCD3P28288 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ABCD3P28288 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.59■□□□□ 0.89
ABCD3P28288 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.59■□□□□ 0.89
ABCD3P28288 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ABCD3P28288 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.59■□□□□ 0.89
ABCD3P28288 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ABCD3P28288 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ABCD3P28288 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ABCD3P28288 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ABCD3P28288 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ABCD3P28288 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
ABCD3P28288 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ABCD3P28288 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ABCD3P28288 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
ABCD3P28288 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ABCD3P28288 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.58■□□□□ 0.89
ABCD3P28288 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.58■□□□□ 0.89
ABCD3P28288 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
ABCD3P28288 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
ABCD3P28288 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
ABCD3P28288 SYT6-210ENST00000641643 1587 ntBASIC20.58■□□□□ 0.88
ABCD3P28288 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ABCD3P28288 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms