Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 AC009299.2-201ENST00000482477 511 ntBASIC17.02■□□□□ 0.32
HLA-DMBP28068 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC17.02■□□□□ 0.32
HLA-DMBP28068 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC17.02■□□□□ 0.32
HLA-DMBP28068 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HLA-DMBP28068 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HLA-DMBP28068 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HLA-DMBP28068 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.01■□□□□ 0.31
HLA-DMBP28068 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DMBP28068 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DMBP28068 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DMBP28068 TRIR-205ENST00000592273 783 ntTSL 3 BASIC17.01■□□□□ 0.31
HLA-DMBP28068 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DMBP28068 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HLA-DMBP28068 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DMBP28068 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HLA-DMBP28068 AC004448.1-201ENST00000458332 883 ntBASIC17■□□□□ 0.31
HLA-DMBP28068 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC17■□□□□ 0.31
HLA-DMBP28068 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC17■□□□□ 0.31
HLA-DMBP28068 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC17■□□□□ 0.31
HLA-DMBP28068 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17■□□□□ 0.31
HLA-DMBP28068 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17■□□□□ 0.31
HLA-DMBP28068 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC17■□□□□ 0.31
HLA-DMBP28068 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DMBP28068 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17■□□□□ 0.31
HLA-DMBP28068 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.99■□□□□ 0.31
HLA-DMBP28068 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DMBP28068 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DMBP28068 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HLA-DMBP28068 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DMBP28068 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC16.98■□□□□ 0.31
HLA-DMBP28068 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DMBP28068 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC16.98■□□□□ 0.31
HLA-DMBP28068 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HLA-DMBP28068 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DMBP28068 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC16.97■□□□□ 0.31
HLA-DMBP28068 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC16.97■□□□□ 0.31
HLA-DMBP28068 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HLA-DMBP28068 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.97■□□□□ 0.31
HLA-DMBP28068 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DMBP28068 GUSBP5-202ENST00000510805 1989 ntBASIC16.97■□□□□ 0.31
HLA-DMBP28068 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
HLA-DMBP28068 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC16.96■□□□□ 0.31
HLA-DMBP28068 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 PRTG-204ENST00000561292 833 ntTSL 3 BASIC16.96■□□□□ 0.31
HLA-DMBP28068 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HLA-DMBP28068 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DMBP28068 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.31
HLA-DMBP28068 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HLA-DMBP28068 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC16.96■□□□□ 0.3
HLA-DMBP28068 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HLA-DMBP28068 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DMBP28068 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DMBP28068 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DMBP28068 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HLA-DMBP28068 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.95■□□□□ 0.3
HLA-DMBP28068 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DMBP28068 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DMBP28068 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DMBP28068 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DMBP28068 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DMBP28068 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC16.94■□□□□ 0.3
HLA-DMBP28068 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DMBP28068 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HLA-DMBP28068 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DMBP28068 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DMBP28068 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.94■□□□□ 0.3
HLA-DMBP28068 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms