Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC35.38■■■■□ 3.25
PCF11O94913 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
PCF11O94913 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
PCF11O94913 AC133637.1-201ENST00000624115 1537 ntBASIC35.38■■■■□ 3.25
PCF11O94913 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC35.38■■■■□ 3.25
PCF11O94913 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC35.38■■■■□ 3.25
PCF11O94913 SP2-202ENST00000613139 908 ntTSL 5 BASIC35.38■■■■□ 3.25
PCF11O94913 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC35.37■■■■□ 3.25
PCF11O94913 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC35.37■■■■□ 3.25
PCF11O94913 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC35.37■■■■□ 3.25
PCF11O94913 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC35.37■■■■□ 3.25
PCF11O94913 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC35.37■■■■□ 3.25
PCF11O94913 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC35.37■■■■□ 3.25
PCF11O94913 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
PCF11O94913 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC35.36■■■■□ 3.25
PCF11O94913 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
PCF11O94913 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC35.36■■■■□ 3.25
PCF11O94913 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
PCF11O94913 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC35.35■■■■□ 3.25
PCF11O94913 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
PCF11O94913 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
PCF11O94913 IKBKGP1-201ENST00000612193 1073 ntBASIC35.35■■■■□ 3.25
PCF11O94913 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC35.35■■■■□ 3.25
PCF11O94913 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC35.35■■■■□ 3.25
PCF11O94913 AC027612.3-201ENST00000413684 1047 ntBASIC35.34■■■■□ 3.25
PCF11O94913 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC35.34■■■■□ 3.25
PCF11O94913 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
PCF11O94913 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC35.34■■■■□ 3.25
PCF11O94913 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC35.34■■■■□ 3.25
PCF11O94913 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
PCF11O94913 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
PCF11O94913 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC35.33■■■■□ 3.25
PCF11O94913 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
PCF11O94913 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC35.33■■■■□ 3.25
PCF11O94913 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC35.33■■■■□ 3.25
PCF11O94913 AC012414.1-201ENST00000556676 535 ntBASIC35.33■■■■□ 3.25
PCF11O94913 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
PCF11O94913 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC35.33■■■■□ 3.25
PCF11O94913 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC35.32■■■■□ 3.25
PCF11O94913 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC35.32■■■■□ 3.25
PCF11O94913 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
PCF11O94913 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC35.32■■■■□ 3.24
PCF11O94913 AC126544.1-201ENST00000580842 1059 ntBASIC35.32■■■■□ 3.24
PCF11O94913 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
PCF11O94913 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC35.31■■■■□ 3.24
PCF11O94913 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC35.31■■■■□ 3.24
PCF11O94913 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC35.3■■■■□ 3.24
PCF11O94913 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC35.3■■■■□ 3.24
PCF11O94913 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC35.3■■■■□ 3.24
PCF11O94913 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC35.3■■■■□ 3.24
PCF11O94913 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
PCF11O94913 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
PCF11O94913 AC144652.1-201ENST00000609974 1624 ntBASIC35.3■■■■□ 3.24
PCF11O94913 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
PCF11O94913 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC35.3■■■■□ 3.24
PCF11O94913 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC35.3■■■■□ 3.24
PCF11O94913 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC35.29■■■■□ 3.24
PCF11O94913 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC35.29■■■■□ 3.24
PCF11O94913 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC35.29■■■■□ 3.24
PCF11O94913 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC35.29■■■■□ 3.24
PCF11O94913 ID1-201ENST00000376105 1233 ntBASIC35.28■■■■□ 3.24
PCF11O94913 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC35.28■■■■□ 3.24
PCF11O94913 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC35.28■■■■□ 3.24
PCF11O94913 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC35.28■■■■□ 3.24
PCF11O94913 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC35.27■■■■□ 3.24
PCF11O94913 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
PCF11O94913 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC35.27■■■■□ 3.24
PCF11O94913 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
PCF11O94913 AICDA-202ENST00000537228 667 ntTSL 5 BASIC35.27■■■■□ 3.24
PCF11O94913 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
PCF11O94913 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
PCF11O94913 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC35.26■■■■□ 3.24
PCF11O94913 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
PCF11O94913 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
PCF11O94913 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC35.26■■■■□ 3.24
PCF11O94913 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC35.26■■■■□ 3.24
PCF11O94913 DUX4L4-201ENST00000566884 1269 ntBASIC35.26■■■■□ 3.24
PCF11O94913 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC35.26■■■■□ 3.24
PCF11O94913 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC35.26■■■■□ 3.23
PCF11O94913 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC35.26■■■■□ 3.23
PCF11O94913 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC35.26■■■■□ 3.23
PCF11O94913 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
PCF11O94913 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
PCF11O94913 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
PCF11O94913 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC35.25■■■■□ 3.23
PCF11O94913 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC35.25■■■■□ 3.23
PCF11O94913 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC35.25■■■■□ 3.23
PCF11O94913 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC35.25■■■■□ 3.23
PCF11O94913 AK1-201ENST00000223836 736 ntTSL 3 BASIC35.25■■■■□ 3.23
PCF11O94913 YBX1P1-201ENST00000445822 960 ntBASIC35.25■■■■□ 3.23
PCF11O94913 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC35.24■■■■□ 3.23
PCF11O94913 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC35.24■■■■□ 3.23
PCF11O94913 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC35.24■■■■□ 3.23
PCF11O94913 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC35.24■■■■□ 3.23
PCF11O94913 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
PCF11O94913 ESRRAP2-201ENST00000418437 1549 ntBASIC35.24■■■■□ 3.23
PCF11O94913 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC35.23■■■■□ 3.23
PCF11O94913 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC35.23■■■■□ 3.23
PCF11O94913 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
PCF11O94913 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms