Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CPZ-204ENST00000504070 583 ntTSL 417.33■□□□□ 0.362e-6■■■■□ 22.6
SMNDC1O75940 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.362e-6■■■■□ 22.6
SMNDC1O75940 GPR78-207ENST00000514302 4944 ntTSL 214.36□□□□□ -0.112e-6■■■■□ 22.6
SMNDC1O75940 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.345e-6■■■■□ 22.6
SMNDC1O75940 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.88■□□□□ 0.295e-6■■■■□ 22.6
SMNDC1O75940 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.83■□□□□ 0.125e-6■■■■□ 22.6
SMNDC1O75940 TYMS-205ENST00000581920 886 ntTSL 57.58□□□□□ -1.25e-6■■■■□ 22.6
SMNDC1O75940 CPZ-208ENST00000514875 597 ntTSL 314.67□□□□□ -0.062e-6■■■■□ 22.6
SMNDC1O75940 TMEM107-205ENST00000449985 1210 ntTSL 1 (best) BASIC12.46□□□□□ -0.413e-52■■■■□ 22.5
SMNDC1O75940 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.272e-6■■■■□ 22.5
SMNDC1O75940 RBM3-210ENST00000491236 729 ntTSL 216.87■□□□□ 0.299e-9■■■■□ 22.5
SMNDC1O75940 RBM3-211ENST00000491240 951 ntTSL 1 (best)14.75□□□□□ -0.059e-9■■■■□ 22.5
SMNDC1O75940 EEF2-205ENST00000598436 549 ntTSL 211.35□□□□□ -0.596e-12■■■■□ 22.5
SMNDC1O75940 NAMPT-201ENST00000222553 4582 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.561e-7■■■■□ 22.4
SMNDC1O75940 NAMPT-207ENST00000463871 671 ntTSL 1 (best)6.39□□□□□ -1.391e-7■■■■□ 22.4
SMNDC1O75940 NADK-208ENST00000477235 1004 ntTSL 214.75□□□□□ -0.055e-6■■■■□ 22.4
SMNDC1O75940 NADK-207ENST00000469045 890 ntTSL 512.98□□□□□ -0.335e-6■■■■□ 22.4
SMNDC1O75940 SNHG14-211ENST00000547292 626 ntTSL 5 BASIC9.56□□□□□ -0.882e-21■■■■□ 22.4
SMNDC1O75940 SNORD116-1-201ENST00000384335 95 ntBASIC8.68□□□□□ -1.022e-21■■■■□ 22.4
SMNDC1O75940 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC8.44□□□□□ -1.062e-21■■■■□ 22.4
SMNDC1O75940 TRAP1-212ENST00000575671 2309 ntTSL 1 (best) BASIC12.65□□□□□ -0.388e-18■■■■□ 22.4
SMNDC1O75940 TRAP1-208ENST00000573872 656 ntTSL 311.67□□□□□ -0.548e-18■■■■□ 22.4
SMNDC1O75940 TRAP1-214ENST00000575854 595 ntTSL 311.07□□□□□ -0.648e-18■■■■□ 22.4
SMNDC1O75940 TRAP1-216ENST00000576335 645 ntTSL 59.9□□□□□ -0.828e-18■■■■□ 22.4
SMNDC1O75940 TSPAN32-211ENST00000484104 725 ntTSL 218.21■□□□□ 0.513e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-214ENST00000493924 1573 ntTSL 517.69■□□□□ 0.423e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-210ENST00000483227 886 ntTSL 1 (best)17.61■□□□□ 0.413e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-209ENST00000479508 741 ntTSL 217.19■□□□□ 0.343e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-203ENST00000381117 798 ntTSL 1 (best)17.19■□□□□ 0.343e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-216ENST00000498313 988 ntTSL 516.73■□□□□ 0.273e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-215ENST00000493948 641 ntTSL 316.25■□□□□ 0.193e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.133e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.85■□□□□ 0.133e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-208ENST00000461200 3325 ntTSL 214.89□□□□□ -0.033e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-202ENST00000339046 1202 ntTSL 214.87□□□□□ -0.033e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.033e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-206ENST00000446063 1262 ntTSL 1 (best)14.58□□□□□ -0.083e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.233e-6■■■■□ 22.4
SMNDC1O75940 TSPAN32-212ENST00000484523 582 ntTSL 512.64□□□□□ -0.393e-6■■■■□ 22.4
SMNDC1O75940 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC12.9□□□□□ -0.343e-12■■■■□ 22.3
SMNDC1O75940 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.932e-7■■■■□ 22.3
SMNDC1O75940 RPL7A-209ENST00000496554 947 ntTSL 216.15■□□□□ 0.181e-71■■■■□ 22.3
SMNDC1O75940 RNF126-207ENST00000605891 1671 ntTSL 527.62■■■□□ 2.013e-6■■■■□ 22.3
SMNDC1O75940 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.73e-6■■■■□ 22.3
SMNDC1O75940 RNF126-203ENST00000589762 963 ntTSL 223.45■■□□□ 1.343e-6■■■■□ 22.3
SMNDC1O75940 RNF126-205ENST00000591394 733 ntTSL 220.17■□□□□ 0.823e-6■■■■□ 22.3
SMNDC1O75940 RNF126-206ENST00000592626 652 ntTSL 216.92■□□□□ 0.33e-6■■■■□ 22.3
SMNDC1O75940 RNF126-204ENST00000590885 1436 ntTSL 516.47■□□□□ 0.233e-6■■■■□ 22.3
SMNDC1O75940 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.68■□□□□ 0.265e-6■■■■□ 22.3
SMNDC1O75940 MAD1L1-221ENST00000486340 646 ntTSL 315.31■□□□□ 0.045e-6■■■■□ 22.3
SMNDC1O75940 MAD1L1-214ENST00000459731 371 ntTSL 39.47□□□□□ -0.895e-6■■■■□ 22.3
SMNDC1O75940 AGAP3-221ENST00000490097 604 ntTSL 413.52□□□□□ -0.253e-6■■■■□ 22.3
SMNDC1O75940 NCL-207ENST00000461347 3967 ntTSL 214.94□□□□□ -0.027e-21■■■■□ 22.2
SMNDC1O75940 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.467e-21■■■■□ 22.2
SMNDC1O75940 ZDHHC8-204ENST00000436518 557 ntTSL 414.03□□□□□ -0.162e-6■■■■□ 22.2
SMNDC1O75940 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.52■□□□□ 0.41e-7■■■■□ 22.2
SMNDC1O75940 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.21■□□□□ 0.191e-7■■■■□ 22.2
SMNDC1O75940 WDR6-211ENST00000471162 3565 ntTSL 1 (best)14.06□□□□□ -0.161e-7■■■■□ 22.2
SMNDC1O75940 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC13.46□□□□□ -0.251e-7■■■■□ 22.2
SMNDC1O75940 WDR6-204ENST00000420783 3656 ntTSL 1 (best)13.07□□□□□ -0.321e-7■■■■□ 22.2
SMNDC1O75940 WDR6-207ENST00000448293 3377 ntTSL 2 BASIC12.38□□□□□ -0.431e-7■■■■□ 22.2
SMNDC1O75940 WDR6-208ENST00000452875 3916 ntTSL 1 (best)11.9□□□□□ -0.51e-7■■■■□ 22.2
SMNDC1O75940 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.541e-7■■■■□ 22.2
SMNDC1O75940 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC11.62□□□□□ -0.551e-7■■■■□ 22.2
SMNDC1O75940 AGAP3-209ENST00000469901 582 ntTSL 317.87■□□□□ 0.452e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.742e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.02■□□□□ 0.482e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-205ENST00000503127 2734 ntTSL 1 (best)17.18■□□□□ 0.342e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.06■□□□□ 0.322e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.092e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-225ENST00000515619 818 ntTSL 514.37□□□□□ -0.112e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-204ENST00000503063 3232 ntTSL 213.93□□□□□ -0.182e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-220ENST00000511937 2669 ntTSL 1 (best)13.67□□□□□ -0.222e-6■■■■□ 22.2
SMNDC1O75940 SPATA20-208ENST00000504334 3539 ntTSL 213.51□□□□□ -0.252e-6■■■■□ 22.2
SMNDC1O75940 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.563e-8■■■■□ 22.2
SMNDC1O75940 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.04□□□□□ -1.445e-21■■■■□ 22.1
SMNDC1O75940 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC6.04□□□□□ -1.445e-21■■■■□ 22.1
SMNDC1O75940 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC6.51□□□□□ -1.375e-37■■■■□ 22.1
SMNDC1O75940 RNU4ATAC-201ENST00000580972 127 ntBASIC5.63□□□□□ -1.515e-37■■■■□ 22.1
SMNDC1O75940 ALDOA-224ENST00000568435 935 ntTSL 1 (best)15.17■□□□□ 0.023e-7■■■■□ 22.1
SMNDC1O75940 ALDOA-223ENST00000567555 554 ntTSL 1 (best)14.04□□□□□ -0.163e-7■■■■□ 22.1
SMNDC1O75940 ALDOA-216ENST00000566012 553 ntTSL 512.27□□□□□ -0.453e-7■■■■□ 22.1
SMNDC1O75940 SRSF2-206ENST00000582449 1518 ntTSL 216.84■□□□□ 0.291e-6■■■■□ 22.1
SMNDC1O75940 MIR636-201ENST00000384825 99 ntBASIC9.79□□□□□ -0.841e-6■■■■□ 22.1
SMNDC1O75940 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.934e-8■■■■□ 22.1
SMNDC1O75940 USP21-209ENST00000492950 1150 ntTSL 520.47■□□□□ 0.874e-8■■■■□ 22.1
SMNDC1O75940 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.22■□□□□ 0.834e-8■■■■□ 22.1
SMNDC1O75940 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.694e-8■■■■□ 22.1
SMNDC1O75940 USP21-204ENST00000479344 709 ntTSL 218.92■□□□□ 0.624e-8■■■■□ 22.1
SMNDC1O75940 PPP6R2-206ENST00000427222 1811 ntTSL 516.55■□□□□ 0.241e-6■■■■□ 22
SMNDC1O75940 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.051e-6■■■■□ 22
SMNDC1O75940 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 01e-6■■■■□ 22
SMNDC1O75940 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.081e-6■■■■□ 22
SMNDC1O75940 PPP6R2-205ENST00000401672 2199 ntTSL 214.06□□□□□ -0.161e-6■■■■□ 22
SMNDC1O75940 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.311e-6■■■■□ 22
SMNDC1O75940 PPP6R2-201ENST00000216061 3415 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.521e-6■■■■□ 22
SMNDC1O75940 SEPT9-231ENST00000590595 569 ntTSL 314.36□□□□□ -0.118e-7■■■■□ 22
SMNDC1O75940 SNORD2-201ENST00000459163 69 ntBASIC0.75□□□□□ -2.291e-323■■■■□ 22
SMNDC1O75940 SNORA12-201ENST00000391162 147 ntBASIC3.81□□□□□ -1.81e-61■■■■□ 22
SMNDC1O75940 EEF1D-240ENST00000531770 589 ntTSL 412.75□□□□□ -0.373e-7■■■■□ 22
Retrieved 100 of 11,362 protein–RNA pairs in 183.2 ms