Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.87■■■□□ 2.37
MSH5O43196 C9orf163-202ENST00000624034 2573 ntBASIC29.87■■■□□ 2.37
MSH5O43196 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC29.87■■■□□ 2.37
MSH5O43196 FOXO3B-201ENST00000395675 1928 ntBASIC29.86■■■□□ 2.37
MSH5O43196 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH5O43196 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC29.86■■■□□ 2.37
MSH5O43196 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH5O43196 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH5O43196 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH5O43196 SYT6-210ENST00000641643 1587 ntBASIC29.86■■■□□ 2.37
MSH5O43196 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
MSH5O43196 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC29.85■■■□□ 2.37
MSH5O43196 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC29.85■■■□□ 2.37
MSH5O43196 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
MSH5O43196 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
MSH5O43196 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH5O43196 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
MSH5O43196 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH5O43196 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH5O43196 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
MSH5O43196 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC29.84■■■□□ 2.37
MSH5O43196 AL603841.1-201ENST00000430516 664 ntBASIC29.84■■■□□ 2.37
MSH5O43196 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC29.84■■■□□ 2.37
MSH5O43196 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
MSH5O43196 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
MSH5O43196 USP48-205ENST00000421625 2818 ntTSL 2 BASIC29.83■■■□□ 2.37
MSH5O43196 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
MSH5O43196 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
MSH5O43196 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
MSH5O43196 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC29.83■■■□□ 2.37
MSH5O43196 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
MSH5O43196 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH5O43196 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH5O43196 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC29.82■■■□□ 2.36
MSH5O43196 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH5O43196 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH5O43196 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH5O43196 PTMA-205ENST00000410064 814 ntTSL 2 BASIC29.82■■■□□ 2.36
MSH5O43196 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC29.82■■■□□ 2.36
MSH5O43196 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
MSH5O43196 RASA4CP-201ENST00000424092 1398 ntBASIC29.81■■■□□ 2.36
MSH5O43196 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH5O43196 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH5O43196 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH5O43196 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC29.81■■■□□ 2.36
MSH5O43196 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC29.81■■■□□ 2.36
MSH5O43196 SF1-220ENST00000626028 704 ntTSL 2 BASIC29.81■■■□□ 2.36
MSH5O43196 RARRES2P11-201ENST00000635158 484 ntBASIC29.81■■■□□ 2.36
MSH5O43196 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
MSH5O43196 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC29.81■■■□□ 2.36
MSH5O43196 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC29.81■■■□□ 2.36
MSH5O43196 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC29.8■■■□□ 2.36
MSH5O43196 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
MSH5O43196 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH5O43196 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH5O43196 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH5O43196 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC29.8■■■□□ 2.36
MSH5O43196 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
MSH5O43196 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC29.8■■■□□ 2.36
MSH5O43196 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
MSH5O43196 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
MSH5O43196 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC29.79■■■□□ 2.36
MSH5O43196 LINC01124-201ENST00000409786 2117 ntBASIC29.79■■■□□ 2.36
MSH5O43196 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC29.79■■■□□ 2.36
MSH5O43196 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
MSH5O43196 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC29.79■■■□□ 2.36
MSH5O43196 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC29.79■■■□□ 2.36
MSH5O43196 AC008764.7-201ENST00000593779 1081 ntBASIC29.79■■■□□ 2.36
MSH5O43196 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
MSH5O43196 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
MSH5O43196 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC29.79■■■□□ 2.36
MSH5O43196 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
MSH5O43196 IRS3P-201ENST00000223076 1006 ntBASIC29.78■■■□□ 2.36
MSH5O43196 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC29.78■■■□□ 2.36
MSH5O43196 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
MSH5O43196 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
MSH5O43196 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC29.78■■■□□ 2.36
MSH5O43196 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC29.77■■■□□ 2.36
MSH5O43196 AC090877.2-201ENST00000558441 1738 ntBASIC29.77■■■□□ 2.36
MSH5O43196 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
MSH5O43196 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
MSH5O43196 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC29.77■■■□□ 2.36
MSH5O43196 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC29.77■■■□□ 2.36
MSH5O43196 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
MSH5O43196 DUSP8P5-201ENST00000422884 1815 ntBASIC29.77■■■□□ 2.36
MSH5O43196 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
MSH5O43196 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC29.77■■■□□ 2.36
MSH5O43196 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
MSH5O43196 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
MSH5O43196 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
MSH5O43196 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC29.76■■■□□ 2.35
MSH5O43196 AC004223.2-201ENST00000590309 544 ntBASIC29.76■■■□□ 2.35
MSH5O43196 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
MSH5O43196 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
MSH5O43196 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
MSH5O43196 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC29.75■■■□□ 2.35
MSH5O43196 LBH-205ENST00000407930 756 ntTSL 2 BASIC29.75■■■□□ 2.35
MSH5O43196 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
MSH5O43196 MIR3908-201ENST00000579798 126 ntBASIC29.75■■■□□ 2.35
MSH5O43196 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC29.75■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms