Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
CCDC88BA6NC98 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
CCDC88BA6NC98 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC39.49■■■■□ 3.91
CCDC88BA6NC98 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC39.49■■■■□ 3.91
CCDC88BA6NC98 KRT18P61-201ENST00000585825 1298 ntBASIC39.49■■■■□ 3.91
CCDC88BA6NC98 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC39.49■■■■□ 3.91
CCDC88BA6NC98 AC004911.1-201ENST00000416316 871 ntBASIC39.49■■■■□ 3.91
CCDC88BA6NC98 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC39.49■■■■□ 3.91
CCDC88BA6NC98 SHF-207ENST00000560540 2062 ntTSL 5 BASIC39.49■■■■□ 3.91
CCDC88BA6NC98 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC39.48■■■■□ 3.91
CCDC88BA6NC98 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC39.48■■■■□ 3.91
CCDC88BA6NC98 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC39.48■■■■□ 3.91
CCDC88BA6NC98 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC39.48■■■■□ 3.91
CCDC88BA6NC98 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
CCDC88BA6NC98 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC39.47■■■■□ 3.91
CCDC88BA6NC98 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
CCDC88BA6NC98 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC39.47■■■■□ 3.91
CCDC88BA6NC98 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC39.47■■■■□ 3.91
CCDC88BA6NC98 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC39.47■■■■□ 3.91
CCDC88BA6NC98 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC39.47■■■■□ 3.91
CCDC88BA6NC98 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC39.46■■■■□ 3.91
CCDC88BA6NC98 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC39.46■■■■□ 3.91
CCDC88BA6NC98 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC39.46■■■■□ 3.91
CCDC88BA6NC98 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
CCDC88BA6NC98 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC39.45■■■■□ 3.91
CCDC88BA6NC98 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
CCDC88BA6NC98 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC39.45■■■■□ 3.91
CCDC88BA6NC98 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
CCDC88BA6NC98 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 VPS53-216ENST00000574029 585 ntTSL 4 BASIC39.43■■■■□ 3.9
CCDC88BA6NC98 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC39.42■■■■□ 3.9
CCDC88BA6NC98 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
CCDC88BA6NC98 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC39.42■■■■□ 3.9
CCDC88BA6NC98 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
CCDC88BA6NC98 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC39.42■■■■□ 3.9
CCDC88BA6NC98 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC39.42■■■■□ 3.9
CCDC88BA6NC98 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC39.42■■■■□ 3.9
CCDC88BA6NC98 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC39.41■■■■□ 3.9
CCDC88BA6NC98 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC39.41■■■■□ 3.9
CCDC88BA6NC98 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC39.41■■■■□ 3.9
CCDC88BA6NC98 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
CCDC88BA6NC98 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC39.41■■■■□ 3.9
CCDC88BA6NC98 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC39.41■■■■□ 3.9
CCDC88BA6NC98 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
CCDC88BA6NC98 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
CCDC88BA6NC98 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC39.4■■■■□ 3.9
CCDC88BA6NC98 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC39.4■■■■□ 3.9
CCDC88BA6NC98 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC39.4■■■■□ 3.9
CCDC88BA6NC98 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC39.39■■■■□ 3.9
CCDC88BA6NC98 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.9
CCDC88BA6NC98 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC39.38■■■■□ 3.9
CCDC88BA6NC98 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.9
CCDC88BA6NC98 DENND3-207ENST00000518347 850 ntTSL 2 BASIC39.38■■■■□ 3.9
CCDC88BA6NC98 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.9
CCDC88BA6NC98 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC39.38■■■■□ 3.89
CCDC88BA6NC98 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC39.38■■■■□ 3.89
CCDC88BA6NC98 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.89
CCDC88BA6NC98 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC39.38■■■■□ 3.89
CCDC88BA6NC98 DUX4L4-201ENST00000566884 1269 ntBASIC39.37■■■■□ 3.89
CCDC88BA6NC98 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC39.37■■■■□ 3.89
CCDC88BA6NC98 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC39.37■■■■□ 3.89
CCDC88BA6NC98 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC39.37■■■■□ 3.89
CCDC88BA6NC98 NTF6G-201ENST00000591094 616 ntBASIC39.37■■■■□ 3.89
CCDC88BA6NC98 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC39.37■■■■□ 3.89
CCDC88BA6NC98 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
CCDC88BA6NC98 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC39.36■■■■□ 3.89
CCDC88BA6NC98 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
CCDC88BA6NC98 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC39.35■■■■□ 3.89
CCDC88BA6NC98 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
CCDC88BA6NC98 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
CCDC88BA6NC98 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
CCDC88BA6NC98 ID1-201ENST00000376105 1233 ntBASIC39.35■■■■□ 3.89
CCDC88BA6NC98 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC39.35■■■■□ 3.89
CCDC88BA6NC98 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
CCDC88BA6NC98 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC39.33■■■■□ 3.89
CCDC88BA6NC98 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC39.33■■■■□ 3.89
CCDC88BA6NC98 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC39.33■■■■□ 3.89
CCDC88BA6NC98 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC39.33■■■■□ 3.89
CCDC88BA6NC98 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC39.32■■■■□ 3.89
CCDC88BA6NC98 LHPP-203ENST00000392757 840 ntTSL 3 BASIC39.32■■■■□ 3.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms