Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV1-2A0A0B4J238 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 AC087393.1-201ENST00000582896 145 ntBASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.53■□□□□ 0.72
TRAV1-2A0A0B4J238 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
TRAV1-2A0A0B4J238 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV1-2A0A0B4J238 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV1-2A0A0B4J238 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.52■□□□□ 0.71
TRAV1-2A0A0B4J238 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
TRAV1-2A0A0B4J238 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 AC133552.2-201ENST00000619106 1032 ntBASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-2A0A0B4J238 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 MIR639-201ENST00000384974 98 ntBASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 AC018755.3-202ENST00000596210 929 ntBASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-2A0A0B4J238 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-2A0A0B4J238 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-2A0A0B4J238 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 AC011551.1-201ENST00000614101 683 ntBASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-2A0A0B4J238 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV1-2A0A0B4J238 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
TRAV1-2A0A0B4J238 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAV1-2A0A0B4J238 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms