Protein–RNA interactions for Protein: Q07878

VPS13, Vacuolar protein sorting-associated protein 13, yeastyeast

Predictions only

Length 3,144 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS13Q07878 RNQ1YCL028W 1218 nt11.7□□□□□ -0.54
VPS13Q07878 IRC15YPL017C 1500 nt11.69□□□□□ -0.54
VPS13Q07878 YLR415CYLR415C 339 nt11.69□□□□□ -0.54
VPS13Q07878 SPT8YLR055C 1809 nt11.68□□□□□ -0.54
VPS13Q07878 GAL1YBR020W 1587 nt11.68□□□□□ -0.54
VPS13Q07878 GIS3YLR094C 1509 nt11.67□□□□□ -0.54
VPS13Q07878 AIM45YPR004C 1035 nt11.63□□□□□ -0.55
VPS13Q07878 YLL053CYLL053C 459 nt11.63□□□□□ -0.55
VPS13Q07878 CUE1YMR264W 612 nt11.6□□□□□ -0.55
VPS13Q07878 ESS1YJR017C 513 nt11.59□□□□□ -0.55
VPS13Q07878 CCT4YDL143W 1587 nt11.59□□□□□ -0.55
VPS13Q07878 CAB5YDR196C 726 nt11.59□□□□□ -0.55
VPS13Q07878 PAU15YIR041W 375 nt11.58□□□□□ -0.56
VPS13Q07878 SWC5YBR231C 912 nt11.58□□□□□ -0.56
VPS13Q07878 ATF2YGR177C 1608 nt11.57□□□□□ -0.56
VPS13Q07878 YJR114WYJR114W 393 nt11.57□□□□□ -0.56
VPS13Q07878 PAU7YAR020C 168 nt11.57□□□□□ -0.56
VPS13Q07878 PUP1YOR157C 786 nt11.55□□□□□ -0.56
VPS13Q07878 TRM5YHR070W 1500 nt11.54□□□□□ -0.56
VPS13Q07878 SHB17YKR043C 816 nt11.53□□□□□ -0.56
VPS13Q07878 AQY1YPR192W 918 nt11.53□□□□□ -0.56
VPS13Q07878 EMI2YDR516C 1503 nt11.53□□□□□ -0.56
VPS13Q07878 STB1YNL309W 1263 nt11.51□□□□□ -0.57
VPS13Q07878 YMR226CYMR226C 804 nt11.5□□□□□ -0.57
VPS13Q07878 BIO4YNR057C 714 nt11.5□□□□□ -0.57
VPS13Q07878 FTR1YER145C 1215 nt11.49□□□□□ -0.57
VPS13Q07878 SEN2YLR105C 1134 nt11.49□□□□□ -0.57
VPS13Q07878 YIL100WYIL100W 354 nt11.48□□□□□ -0.57
VPS13Q07878 VPS60YDR486C 690 nt11.47□□□□□ -0.57
VPS13Q07878 SPC25YER018C 666 nt11.47□□□□□ -0.57
VPS13Q07878 tS(GCU)LtS(GCU)L 80 nt11.47□□□□□ -0.57
VPS13Q07878 BMT6YLR063W 1098 nt11.47□□□□□ -0.57
VPS13Q07878 RET2YFR051C 1641 nt11.47□□□□□ -0.57
VPS13Q07878 YDR010CYDR010C 333 nt11.46□□□□□ -0.57
VPS13Q07878 SGT2YOR007C 1041 nt11.46□□□□□ -0.57
VPS13Q07878 YLR279WYLR279W 390 nt11.44□□□□□ -0.58
VPS13Q07878 YLR111WYLR111W 333 nt11.43□□□□□ -0.58
VPS13Q07878 TIM17YJL143W 477 nt11.4□□□□□ -0.58
VPS13Q07878 YCR087WYCR087W 516 nt11.39□□□□□ -0.59
VPS13Q07878 FUN14YAL008W 597 nt11.38□□□□□ -0.59
VPS13Q07878 SHM2YLR058C 1410 nt11.37□□□□□ -0.59
VPS13Q07878 GPI16YHR188C 1833 nt11.37□□□□□ -0.59
VPS13Q07878 SCC4YER147C 1875 nt11.36□□□□□ -0.59
VPS13Q07878 YSR3YKR053C 1215 nt11.35□□□□□ -0.59
VPS13Q07878 YDR524C-BYDR524C-B 201 nt11.35□□□□□ -0.59
VPS13Q07878 YLR437C-AYLR437C-A 228 nt11.34□□□□□ -0.59
VPS13Q07878 GPN2YOR262W 1044 nt11.33□□□□□ -0.6
VPS13Q07878 PHO89YBR296C 1725 nt11.28□□□□□ -0.6
VPS13Q07878 RRT12YCR045C 1476 nt11.27□□□□□ -0.61
VPS13Q07878 LYS4YDR234W 2082 nt11.27□□□□□ -0.61
VPS13Q07878 YDL221WYDL221W 552 nt11.25□□□□□ -0.61
VPS13Q07878 SDH1YKL148C 1923 nt11.24□□□□□ -0.61
VPS13Q07878 ANP1YEL036C 1503 nt11.23□□□□□ -0.61
VPS13Q07878 DDR2YOL052C-A 186 nt11.23□□□□□ -0.61
VPS13Q07878 COQ2YNR041C 1119 nt11.21□□□□□ -0.61
VPS13Q07878 YHL050CYHL050C 2094 nt11.21□□□□□ -0.61
VPS13Q07878 FEN2YCR028C 1539 nt11.21□□□□□ -0.62
VPS13Q07878 ERG6YML008C 1152 nt11.2□□□□□ -0.62
VPS13Q07878 YDL086C-AYDL086C-A 435 nt11.2□□□□□ -0.62
VPS13Q07878 SIM1YIL123W 1431 nt11.19□□□□□ -0.62
VPS13Q07878 YJL195CYJL195C 702 nt11.17□□□□□ -0.62
VPS13Q07878 SNG1YGR197C 1644 nt11.17□□□□□ -0.62
VPS13Q07878 SDH5YOL071W 489 nt11.15□□□□□ -0.62
VPS13Q07878 YFL067WYFL067W 528 nt11.13□□□□□ -0.63
VPS13Q07878 SLG1YOR008C 1137 nt11.13□□□□□ -0.63
VPS13Q07878 RAD23YEL037C 1197 nt11.12□□□□□ -0.63
VPS13Q07878 SFA1YDL168W 1161 nt11.11□□□□□ -0.63
VPS13Q07878 RPL4BYDR012W 1089 nt11.09□□□□□ -0.63
VPS13Q07878 ADH1YOL086C 1047 nt11.09□□□□□ -0.63
VPS13Q07878 RPL4AYBR031W 1089 nt11.09□□□□□ -0.63
VPS13Q07878 CRR1YLR213C 1269 nt11.08□□□□□ -0.64
VPS13Q07878 MRP20YDR405W 792 nt11.08□□□□□ -0.64
VPS13Q07878 NAP1YKR048C 1254 nt11.07□□□□□ -0.64
VPS13Q07878 NCP1YHR042W 2076 nt11.03□□□□□ -0.64
VPS13Q07878 XDJ1YLR090W 1380 nt10.99□□□□□ -0.65
VPS13Q07878 YEL008WYEL008W 381 nt10.98□□□□□ -0.65
VPS13Q07878 RIB1YBL033C 1038 nt10.98□□□□□ -0.65
VPS13Q07878 NIT1YIL164C 600 nt10.97□□□□□ -0.65
VPS13Q07878 RPS14BYJL191W 417 nt10.97□□□□□ -0.65
VPS13Q07878 MIC10YCL057C-A 294 nt10.97□□□□□ -0.65
VPS13Q07878 RIB3YDR487C 627 nt10.96□□□□□ -0.65
VPS13Q07878 YHL019W-AYHL019W-A 594 nt10.96□□□□□ -0.66
VPS13Q07878 YGR012WYGR012W 1182 nt10.95□□□□□ -0.66
VPS13Q07878 CPD1YGR247W 720 nt10.93□□□□□ -0.66
VPS13Q07878 YMR090WYMR090W 684 nt10.93□□□□□ -0.66
VPS13Q07878 YBR220CYBR220C 1683 nt10.93□□□□□ -0.66
VPS13Q07878 YIR016WYIR016W 798 nt10.91□□□□□ -0.66
VPS13Q07878 PAU5YFL020C 369 nt10.89□□□□□ -0.67
VPS13Q07878 MSB4YOL112W 1479 nt10.87□□□□□ -0.67
VPS13Q07878 HIP1YGR191W 1812 nt10.87□□□□□ -0.67
VPS13Q07878 YNL195CYNL195C 786 nt10.87□□□□□ -0.67
VPS13Q07878 BUD20YLR074C 501 nt10.86□□□□□ -0.67
VPS13Q07878 YJL064WYJL064W 396 nt10.85□□□□□ -0.67
VPS13Q07878 ERF2YLR246W 1080 nt10.84□□□□□ -0.67
VPS13Q07878 TIM44YIL022W 1296 nt10.84□□□□□ -0.67
VPS13Q07878 AAC1YMR056C 930 nt10.84□□□□□ -0.67
VPS13Q07878 RIB2YOL066C 1776 nt10.83□□□□□ -0.68
VPS13Q07878 SSA4YER103W 1929 nt10.82□□□□□ -0.68
VPS13Q07878 POP2YNR052C 1302 nt10.82□□□□□ -0.68
VPS13Q07878 TSC10YBR265W 963 nt10.82□□□□□ -0.68
Retrieved 100 of 7,029 protein–RNA pairs in 13.4 ms