Protein–RNA interactions for Protein: P0CH08

RPL40A, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40AP0CH08 YMR226CYMR226C 804 nt10.49□□□□□ -0.73
RPL40AP0CH08 GIS3YLR094C 1509 nt10.48□□□□□ -0.73
RPL40AP0CH08 ADH2YMR303C 1047 nt10.47□□□□□ -0.73
RPL40AP0CH08 YNR029CYNR029C 1290 nt10.46□□□□□ -0.73
RPL40AP0CH08 BDH1YAL060W 1149 nt10.45□□□□□ -0.74
RPL40AP0CH08 YSC84YHR016C 1407 nt10.43□□□□□ -0.74
RPL40AP0CH08 YLR415CYLR415C 339 nt10.43□□□□□ -0.74
RPL40AP0CH08 PIB2YGL023C 1908 nt10.43□□□□□ -0.74
RPL40AP0CH08 VPS75YNL246W 795 nt10.42□□□□□ -0.74
RPL40AP0CH08 RBG1YAL036C 1110 nt10.37□□□□□ -0.75
RPL40AP0CH08 RTF1YGL244W 1677 nt10.35□□□□□ -0.75
RPL40AP0CH08 YHL050CYHL050C 2094 nt10.35□□□□□ -0.75
RPL40AP0CH08 STE4YOR212W 1272 nt10.34□□□□□ -0.75
RPL40AP0CH08 RNQ1YCL028W 1218 nt10.34□□□□□ -0.75
RPL40AP0CH08 PAU7YAR020C 168 nt10.32□□□□□ -0.76
RPL40AP0CH08 RTS2YOR077W 699 nt10.32□□□□□ -0.76
RPL40AP0CH08 UBA4YHR111W 1323 nt10.32□□□□□ -0.76
RPL40AP0CH08 YLR349WYLR349W 507 nt10.3□□□□□ -0.76
RPL40AP0CH08 YSR3YKR053C 1215 nt10.29□□□□□ -0.76
RPL40AP0CH08 ADH7YCR105W 1086 nt10.28□□□□□ -0.76
RPL40AP0CH08 YIH1YCR059C 777 nt10.26□□□□□ -0.77
RPL40AP0CH08 BOP3YNL042W 1191 nt10.26□□□□□ -0.77
RPL40AP0CH08 AQY1YPR192W 918 nt10.26□□□□□ -0.77
RPL40AP0CH08 YJL225CYJL225C 5277 nt10.26□□□□□ -0.77
RPL40AP0CH08 PAU15YIR041W 375 nt10.25□□□□□ -0.77
RPL40AP0CH08 XYL2YLR070C 1071 nt10.24□□□□□ -0.77
RPL40AP0CH08 PCM1YEL058W 1674 nt10.23□□□□□ -0.77
RPL40AP0CH08 CUE1YMR264W 612 nt10.23□□□□□ -0.77
RPL40AP0CH08 RRT12YCR045C 1476 nt10.23□□□□□ -0.77
RPL40AP0CH08 YNL195CYNL195C 786 nt10.21□□□□□ -0.77
RPL40AP0CH08 YLR111WYLR111W 333 nt10.19□□□□□ -0.78
RPL40AP0CH08 PTK1YKL198C 1989 nt10.18□□□□□ -0.78
RPL40AP0CH08 SHB17YKR043C 816 nt10.18□□□□□ -0.78
RPL40AP0CH08 ALG3YBL082C 1377 nt10.16□□□□□ -0.78
RPL40AP0CH08 YCR087WYCR087W 516 nt10.14□□□□□ -0.79
RPL40AP0CH08 CCT4YDL143W 1587 nt10.14□□□□□ -0.79
RPL40AP0CH08 YIL100WYIL100W 354 nt10.13□□□□□ -0.79
RPL40AP0CH08 AIM45YPR004C 1035 nt10.12□□□□□ -0.79
RPL40AP0CH08 SPT8YLR055C 1809 nt10.1□□□□□ -0.79
RPL40AP0CH08 SWC5YBR231C 912 nt10.1□□□□□ -0.79
RPL40AP0CH08 FTR1YER145C 1215 nt10.09□□□□□ -0.79
RPL40AP0CH08 STB1YNL309W 1263 nt10.09□□□□□ -0.79
RPL40AP0CH08 FUN14YAL008W 597 nt10.08□□□□□ -0.8
RPL40AP0CH08 YLL053CYLL053C 459 nt10.08□□□□□ -0.8
RPL40AP0CH08 GAL1YBR020W 1587 nt10.08□□□□□ -0.8
RPL40AP0CH08 SPC25YER018C 666 nt10.07□□□□□ -0.8
RPL40AP0CH08 ESS1YJR017C 513 nt10.05□□□□□ -0.8
RPL40AP0CH08 YLR279WYLR279W 390 nt10.05□□□□□ -0.8
RPL40AP0CH08 GPI16YHR188C 1833 nt10.05□□□□□ -0.8
RPL40AP0CH08 NAP1YKR048C 1254 nt10.03□□□□□ -0.8
RPL40AP0CH08 NCP1YHR042W 2076 nt10.03□□□□□ -0.8
RPL40AP0CH08 tS(GCU)LtS(GCU)L 80 nt10.02□□□□□ -0.81
RPL40AP0CH08 PHO89YBR296C 1725 nt10.02□□□□□ -0.81
RPL40AP0CH08 YDR010CYDR010C 333 nt10.01□□□□□ -0.81
RPL40AP0CH08 YDR524C-BYDR524C-B 201 nt10.01□□□□□ -0.81
RPL40AP0CH08 PUP1YOR157C 786 nt10.01□□□□□ -0.81
RPL40AP0CH08 BOR1YNL275W 1731 nt10□□□□□ -0.81
RPL40AP0CH08 VPS60YDR486C 690 nt10□□□□□ -0.81
RPL40AP0CH08 TRM5YHR070W 1500 nt10□□□□□ -0.81
RPL40AP0CH08 YJR114WYJR114W 393 nt9.99□□□□□ -0.81
RPL40AP0CH08 RET2YFR051C 1641 nt9.98□□□□□ -0.81
RPL40AP0CH08 TIM17YJL143W 477 nt9.97□□□□□ -0.81
RPL40AP0CH08 YJL195CYJL195C 702 nt9.97□□□□□ -0.81
RPL40AP0CH08 YFL054CYFL054C 1941 nt9.97□□□□□ -0.81
RPL40AP0CH08 GPN2YOR262W 1044 nt9.95□□□□□ -0.82
RPL40AP0CH08 SEN2YLR105C 1134 nt9.93□□□□□ -0.82
RPL40AP0CH08 MRP20YDR405W 792 nt9.91□□□□□ -0.82
RPL40AP0CH08 BIO4YNR057C 714 nt9.91□□□□□ -0.82
RPL40AP0CH08 CPD1YGR247W 720 nt9.89□□□□□ -0.83
RPL40AP0CH08 YLR437C-AYLR437C-A 228 nt9.89□□□□□ -0.83
RPL40AP0CH08 DDR2YOL052C-A 186 nt9.89□□□□□ -0.83
RPL40AP0CH08 RAD23YEL037C 1197 nt9.88□□□□□ -0.83
RPL40AP0CH08 SDH5YOL071W 489 nt9.87□□□□□ -0.83
RPL40AP0CH08 BMT6YLR063W 1098 nt9.86□□□□□ -0.83
RPL40AP0CH08 FEN2YCR028C 1539 nt9.83□□□□□ -0.84
RPL40AP0CH08 UME6YDR207C 2511 nt9.81□□□□□ -0.84
RPL40AP0CH08 YFL067WYFL067W 528 nt9.81□□□□□ -0.84
RPL40AP0CH08 COQ2YNR041C 1119 nt9.81□□□□□ -0.84
RPL40AP0CH08 RDN37-1RDN37-1 5354 nt9.81□□□□□ -0.84
RPL40AP0CH08 RDN37-2RDN37-2 5354 nt9.81□□□□□ -0.84
RPL40AP0CH08 YEL008WYEL008W 381 nt9.8□□□□□ -0.84
RPL40AP0CH08 YDL086C-AYDL086C-A 435 nt9.79□□□□□ -0.84
RPL40AP0CH08 SGT2YOR007C 1041 nt9.78□□□□□ -0.84
RPL40AP0CH08 SHM2YLR058C 1410 nt9.78□□□□□ -0.84
RPL40AP0CH08 ATF2YGR177C 1608 nt9.78□□□□□ -0.84
RPL40AP0CH08 SIM1YIL123W 1431 nt9.77□□□□□ -0.85
RPL40AP0CH08 TIM44YIL022W 1296 nt9.76□□□□□ -0.85
RPL40AP0CH08 ADH1YOL086C 1047 nt9.75□□□□□ -0.85
RPL40AP0CH08 RPL4BYDR012W 1089 nt9.74□□□□□ -0.85
RPL40AP0CH08 RIB3YDR487C 627 nt9.74□□□□□ -0.85
RPL40AP0CH08 RPL4AYBR031W 1089 nt9.74□□□□□ -0.85
RPL40AP0CH08 ANP1YEL036C 1503 nt9.73□□□□□ -0.85
RPL40AP0CH08 CAB5YDR196C 726 nt9.73□□□□□ -0.85
RPL40AP0CH08 SWE1YJL187C 2460 nt9.73□□□□□ -0.85
RPL40AP0CH08 RIB1YBL033C 1038 nt9.72□□□□□ -0.85
RPL40AP0CH08 HSP60YLR259C 1719 nt9.71□□□□□ -0.85
RPL40AP0CH08 YIR016WYIR016W 798 nt9.71□□□□□ -0.86
RPL40AP0CH08 NIT1YIL164C 600 nt9.69□□□□□ -0.86
RPL40AP0CH08 ERF2YLR246W 1080 nt9.68□□□□□ -0.86
RPL40AP0CH08 CLB6YGR109C 1143 nt9.67□□□□□ -0.86
Retrieved 100 of 7,029 protein–RNA pairs in 14.1 ms