Protein–RNA interactions for Protein: P06748

NPM1, Nucleophosmin, humanhuman

Known RBP eCLIP

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1P06748 STXBP3-204ENST00000483586 561 ntTSL 227.47■■□□□ 1.993e-7■■□□□ 13.8
NPM1P06748 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.183e-7■■□□□ 13.8
NPM1P06748 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC29.3■■■□□ 2.281e-6■■□□□ 13.5
NPM1P06748 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.011e-6■■□□□ 13.5
NPM1P06748 HSP90B1-203ENST00000548462 3032 ntTSL 215.52■□□□□ 0.071e-6■■□□□ 13.5
NPM1P06748 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.251e-6■■□□□ 13.4
NPM1P06748 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.071e-6■■□□□ 13.4
NPM1P06748 HSP90AA1-210ENST00000560130 488 ntTSL 211.9□□□□□ -0.56e-37■■□□□ 12.8
NPM1P06748 GAS5-209ENST00000430245 723 ntTSL 3 BASIC22.56■■□□□ 1.21e-27■■□□□ 12.8
NPM1P06748 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC17.67■□□□□ 0.421e-27■■□□□ 12.8
NPM1P06748 GAS5-203ENST00000416952 799 ntTSL 216.09■□□□□ 0.171e-27■■□□□ 12.8
NPM1P06748 GAS5-214ENST00000436656 822 ntTSL 316.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-216ENST00000443799 897 ntTSL 516.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-224ENST00000454068 688 ntTSL 5 BASIC15.72■□□□□ 0.111e-27■■□□□ 12.8
NPM1P06748 GAS5-210ENST00000431268 1698 ntTSL 214.5□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-229ENST00000458220 469 ntTSL 214.49□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-219ENST00000449289 542 ntTSL 3 BASIC13.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-220ENST00000449589 712 ntTSL 313.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-226ENST00000455838 632 ntTSL 213.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-211ENST00000432536 959 ntTSL 2 BASIC12.82□□□□□ -0.361e-27■■□□□ 12.8
NPM1P06748 GAS5-227ENST00000456293 583 ntTSL 311.88□□□□□ -0.511e-27■■□□□ 12.8
NPM1P06748 GAS5-204ENST00000421068 1060 ntTSL 211.25□□□□□ -0.611e-27■■□□□ 12.8
NPM1P06748 GAS5-228ENST00000456812 723 ntTSL 311.2□□□□□ -0.621e-27■■□□□ 12.8
NPM1P06748 GAS5-206ENST00000422183 745 ntTSL 210.81□□□□□ -0.681e-27■■□□□ 12.8
NPM1P06748 GAS5-201ENST00000412059 979 ntTSL 510.31□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-215ENST00000442067 1114 ntTSL 210.3□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-218ENST00000448718 565 ntTSL 2 BASIC9.97□□□□□ -0.811e-27■■□□□ 12.8
NPM1P06748 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC9.34□□□□□ -0.911e-27■■□□□ 12.8
NPM1P06748 GAS5-223ENST00000452197 483 ntTSL 3 BASIC8.96□□□□□ -0.981e-27■■□□□ 12.8
NPM1P06748 GAS5-208ENST00000425771 242 ntTSL 3 BASIC7.95□□□□□ -1.141e-27■■□□□ 12.8
NPM1P06748 GAS5-205ENST00000422008 497 ntTSL 37.23□□□□□ -1.251e-27■■□□□ 12.8
NPM1P06748 GAS5-213ENST00000436285 772 ntTSL 26.58□□□□□ -1.361e-27■■□□□ 12.8
NPM1P06748 HAT1-204ENST00000457761 1642 ntTSL 1 (best)14.88□□□□□ -0.031e-6■■□□□ 12.8
NPM1P06748 HAT1-203ENST00000412731 1567 ntTSL 1 (best)13.19□□□□□ -0.31e-6■■□□□ 12.8
NPM1P06748 HAT1-206ENST00000494601 3845 ntTSL 1 (best)12.15□□□□□ -0.461e-6■■□□□ 12.8
NPM1P06748 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.761e-6■■□□□ 12.8
NPM1P06748 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC29.78■■■□□ 2.363e-7■■□□□ 12.7
NPM1P06748 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.971e-6■■□□□ 12.5
NPM1P06748 HSP90B1-209ENST00000552051 581 ntTSL 215.26■□□□□ 0.032e-8■■□□□ 12.3
NPM1P06748 METAP2-211ENST00000553151 564 ntTSL 526.92■■□□□ 1.91e-8■■□□□ 11.5
NPM1P06748 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC22.73■■□□□ 1.231e-8■■□□□ 11.5
NPM1P06748 METAP2-203ENST00000535095 2431 ntTSL 220.8■□□□□ 0.921e-8■■□□□ 11.5
NPM1P06748 METAP2-209ENST00000550777 1779 ntTSL 5 BASIC19.04■□□□□ 0.641e-8■■□□□ 11.5
NPM1P06748 METAP2-201ENST00000261220 1836 ntTSL 2 BASIC17.1■□□□□ 0.331e-8■■□□□ 11.5
NPM1P06748 METAP2-210ENST00000551840 1874 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.111e-8■■□□□ 11.5
NPM1P06748 METAP2-208ENST00000549808 538 ntTSL 413.23□□□□□ -0.291e-8■■□□□ 11.5
NPM1P06748 METAP2-204ENST00000546478 232 ntTSL 212.73□□□□□ -0.371e-8■■□□□ 11.5
NPM1P06748 METAP2-202ENST00000323666 3601 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.41e-8■■□□□ 11.5
NPM1P06748 EGFL7-207ENST00000492862 723 ntTSL 531.07■■■□□ 2.561e-5■□□□□ 11.2
NPM1P06748 EGFL7-205ENST00000490469 456 ntTSL 528.35■■■□□ 2.131e-5■□□□□ 11.2
NPM1P06748 HSP90B1-207ENST00000550595 694 ntTSL 212.73□□□□□ -0.371e-6■□□□□ 11
NPM1P06748 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.034e-9■□□□□ 11
NPM1P06748 NUCKS1-202ENST00000464938 228 ntTSL 25.67□□□□□ -1.54e-9■□□□□ 11
NPM1P06748 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC28.6■■■□□ 2.175e-7■□□□□ 10.7
NPM1P06748 ANP32E-203ENST00000436748 1339 ntTSL 2 BASIC16.95■□□□□ 0.35e-7■□□□□ 10.7
NPM1P06748 ANP32E-210ENST00000629042 3054 ntTSL 5 BASIC14.37□□□□□ -0.115e-7■□□□□ 10.7
NPM1P06748 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC13.81□□□□□ -0.25e-7■□□□□ 10.7
NPM1P06748 ANP32E-207ENST00000534437 616 ntTSL 313.06□□□□□ -0.325e-7■□□□□ 10.7
NPM1P06748 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC12.38□□□□□ -0.435e-7■□□□□ 10.7
NPM1P06748 ANP32E-208ENST00000583931 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.525e-7■□□□□ 10.7
NPM1P06748 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC5.29□□□□□ -1.565e-7■□□□□ 10.7
NPM1P06748 HNRNPM-208ENST00000597270 1147 ntTSL 235.24■■■■□ 3.234e-6■□□□□ 10.5
NPM1P06748 HNRNPM-204ENST00000594907 1078 ntTSL 532.81■■■□□ 2.844e-6■□□□□ 10.5
NPM1P06748 HNRNPM-213ENST00000600092 1086 ntTSL 231.24■■■□□ 2.594e-6■□□□□ 10.5
NPM1P06748 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.444e-6■□□□□ 10.5
NPM1P06748 HNRNPM-214ENST00000600806 2373 ntTSL 526.63■■□□□ 1.854e-6■□□□□ 10.5
NPM1P06748 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.84e-6■□□□□ 10.5
NPM1P06748 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.534e-6■□□□□ 10.5
NPM1P06748 HNRNPM-210ENST00000598367 298 ntTSL 518.9■□□□□ 0.624e-6■□□□□ 10.5
NPM1P06748 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.341e-323■□□□□ 10.4
NPM1P06748 SYCP2L-202ENST00000341041 3069 ntTSL 216.88■□□□□ 0.291e-323■□□□□ 10.4
NPM1P06748 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.281e-323■□□□□ 10.4
NPM1P06748 SNX5-206ENST00000469704 696 ntTSL 344.83■■■■■ 4.776e-41■□□□□ 10.1
NPM1P06748 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.756e-41■□□□□ 10.1
NPM1P06748 SNX5-203ENST00000419004 778 ntTSL 527.94■■■□□ 2.066e-41■□□□□ 10.1
NPM1P06748 SNX5-204ENST00000431277 840 ntTSL 526.64■■□□□ 1.866e-41■□□□□ 10.1
NPM1P06748 OVOL2-204ENST00000486776 550 ntTSL 323.35■■□□□ 1.336e-41■□□□□ 10.1
NPM1P06748 SNX5-214ENST00000490175 2025 ntTSL 1 (best)22.41■■□□□ 1.186e-41■□□□□ 10.1
NPM1P06748 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.056e-41■□□□□ 10.1
NPM1P06748 SNX5-207ENST00000474883 695 ntTSL 59.97□□□□□ -0.816e-41■□□□□ 10.1
NPM1P06748 SNORD17-201ENST00000390930 237 ntBASIC5.71□□□□□ -1.56e-41■□□□□ 10.1
NPM1P06748 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.992e-7■□□□□ 10.1
NPM1P06748 HSP90B1-202ENST00000540297 590 ntTSL 332.82■■■□□ 2.841e-7■□□□□ 9.6
NPM1P06748 HSP90B1-204ENST00000548622 839 ntTSL 230.42■■■□□ 2.461e-7■□□□□ 9.6
NPM1P06748 HSP90B1-205ENST00000549334 581 ntTSL 429.37■■■□□ 2.291e-7■□□□□ 9.6
NPM1P06748 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC41.82■■■■■ 4.294e-9■□□□□ 9.6
NPM1P06748 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC24.73■■□□□ 1.554e-9■□□□□ 9.6
NPM1P06748 THAP9-AS1-202ENST00000504520 2770 ntTSL 1 (best) BASIC16.97■□□□□ 0.314e-13■□□□□ 9.6
NPM1P06748 SEC31A-220ENST00000507051 458 ntTSL 416.4■□□□□ 0.224e-13■□□□□ 9.6
NPM1P06748 SEC31A-218ENST00000506495 541 ntTSL 415.74■□□□□ 0.114e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-208ENST00000508772 566 ntTSL 415.74■□□□□ 0.114e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-210ENST00000511271 516 ntTSL 214.61□□□□□ -0.074e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-204ENST00000504792 2577 ntTSL 2 BASIC13.1□□□□□ -0.314e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-211ENST00000512932 971 ntTSL 212.31□□□□□ -0.444e-13■□□□□ 9.6
NPM1P06748 SEC31A-222ENST00000507676 551 ntTSL 411.95□□□□□ -0.54e-13■□□□□ 9.6
NPM1P06748 SEC31A-211ENST00000503210 553 ntTSL 410.82□□□□□ -0.684e-13■□□□□ 9.6
NPM1P06748 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.96□□□□□ -1.34e-13■□□□□ 9.6
NPM1P06748 HNRNPD-205ENST00000507010 748 ntTSL 342.49■■■■■ 4.391e-6■□□□□ 9.3
NPM1P06748 LARP1-211ENST00000521577 817 ntTSL 539.93■■■■□ 3.981e-6■□□□□ 9.3
NPM1P06748 HNRNPD-204ENST00000503822 607 ntTSL 539.5■■■■□ 3.911e-6■□□□□ 9.3
Retrieved 100 of 408 protein–RNA pairs in 41.1 ms