Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 HLA-DMA-203ENST00000395305 777 ntBASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 SLC25A15P3-201ENST00000505530 290 ntBASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 IQSEC3P1-201ENST00000538799 536 ntBASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 RPL17P45-201ENST00000586289 509 ntBASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 MIR6842-201ENST00000612539 65 ntBASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 AC008620.2-201ENST00000510294 1569 ntBASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL4A3BPQ9Y5P4 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC004554.1-201ENST00000422830 1468 ntBASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 PPP1R2P4-201ENST00000424051 595 ntBASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC098934.1-203ENST00000442868 1262 ntBASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 ERP29P1-201ENST00000442902 706 ntBASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC008267.1-201ENST00000474858 1069 ntBASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 AC025262.2-201ENST00000623975 1056 ntBASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL4A3BPQ9Y5P4 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
COL4A3BPQ9Y5P4 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL4A3BPQ9Y5P4 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC15.59■□□□□ 0.09
COL4A3BPQ9Y5P4 AC135782.3-201ENST00000562782 2105 ntBASIC15.59■□□□□ 0.09
COL4A3BPQ9Y5P4 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL4A3BPQ9Y5P4 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms