Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC020910.6-201ENST00000623084 1459 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 AP000354.1-201ENST00000396982 456 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 MIR1301-201ENST00000408518 82 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 RN7SL375P-201ENST00000492442 298 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 AC095040.1-201ENST00000513286 675 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC14.21□□□□□ -0.13
USP39Q53GS9 VENTXP3-201ENST00000546480 773 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 SORD2P-201ENST00000558556 1069 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 AC010327.5-201ENST00000586923 3061 ntBASIC14.21□□□□□ -0.13
USP39Q53GS9 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
USP39Q53GS9 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
USP39Q53GS9 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
USP39Q53GS9 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
USP39Q53GS9 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
USP39Q53GS9 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
USP39Q53GS9 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
USP39Q53GS9 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
USP39Q53GS9 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC14.2□□□□□ -0.14
USP39Q53GS9 NME4-203ENST00000397722 1232 ntTSL 2 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.2□□□□□ -0.14
USP39Q53GS9 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC090136.2-201ENST00000517809 420 ntBASIC14.2□□□□□ -0.14
USP39Q53GS9 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC14.2□□□□□ -0.14
USP39Q53GS9 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.2□□□□□ -0.14
USP39Q53GS9 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC14.2□□□□□ -0.14
USP39Q53GS9 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC010632.2-201ENST00000588369 1224 ntBASIC14.2□□□□□ -0.14
USP39Q53GS9 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC006548.2-201ENST00000605217 529 ntBASIC14.2□□□□□ -0.14
USP39Q53GS9 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC14.2□□□□□ -0.14
USP39Q53GS9 MIR6074-201ENST00000612054 107 ntBASIC14.2□□□□□ -0.14
USP39Q53GS9 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC067931.2-201ENST00000623655 2003 ntBASIC14.2□□□□□ -0.14
USP39Q53GS9 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 FUCA1P1-201ENST00000374476 1351 ntBASIC14.2□□□□□ -0.14
USP39Q53GS9 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC14.2□□□□□ -0.14
USP39Q53GS9 AC215219.1-201ENST00000400706 1817 ntBASIC14.2□□□□□ -0.14
USP39Q53GS9 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
USP39Q53GS9 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms