Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 ABCD1P2-201ENST00000429313 1601 ntBASIC14.63□□□□□ -0.07
HDAC4P56524 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 DMBT1P1-203ENST00000636837 4628 ntBASIC14.62□□□□□ -0.07
HDAC4P56524 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 AC005562.1-201ENST00000583030 3219 ntBASIC14.62□□□□□ -0.07
HDAC4P56524 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
HDAC4P56524 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.62□□□□□ -0.07
HDAC4P56524 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 SNORA50C-201ENST00000408535 133 ntBASIC14.62□□□□□ -0.07
HDAC4P56524 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 AC008723.1-201ENST00000506922 207 ntBASIC14.62□□□□□ -0.07
HDAC4P56524 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HDAC4P56524 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.62□□□□□ -0.07
HDAC4P56524 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.62□□□□□ -0.07
HDAC4P56524 SNORA50.1-201ENST00000628590 135 ntBASIC14.62□□□□□ -0.07
HDAC4P56524 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.62□□□□□ -0.07
HDAC4P56524 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 AC004554.1-201ENST00000422830 1468 ntBASIC14.62□□□□□ -0.07
HDAC4P56524 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
HDAC4P56524 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HDAC4P56524 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
HDAC4P56524 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HDAC4P56524 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.61□□□□□ -0.07
HDAC4P56524 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC14.61□□□□□ -0.07
HDAC4P56524 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.61□□□□□ -0.07
HDAC4P56524 AL353637.1-201ENST00000451571 732 ntBASIC14.61□□□□□ -0.07
HDAC4P56524 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.61□□□□□ -0.07
HDAC4P56524 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.61□□□□□ -0.07
HDAC4P56524 JPT2-214ENST00000569765 782 ntTSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 AL353770.1-201ENST00000614915 403 ntBASIC14.61□□□□□ -0.07
HDAC4P56524 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 AC138627.1-207ENST00000641560 1006 ntBASIC14.61□□□□□ -0.07
HDAC4P56524 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms