Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 AC021723.1-201ENST00000486306 515 ntBASIC14.82□□□□□ -0.04
LIG3P49916 ALG3P1-201ENST00000508806 1114 ntBASIC14.82□□□□□ -0.04
LIG3P49916 ZNF767P-206ENST00000513792 565 ntBASIC14.82□□□□□ -0.04
LIG3P49916 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.82□□□□□ -0.04
LIG3P49916 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.82□□□□□ -0.04
LIG3P49916 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 AC135782.3-201ENST00000562782 2105 ntBASIC14.82□□□□□ -0.04
LIG3P49916 DUX4L46-201ENST00000566845 751 ntBASIC14.82□□□□□ -0.04
LIG3P49916 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.82□□□□□ -0.04
LIG3P49916 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 AC008825.2-201ENST00000603374 718 ntBASIC14.82□□□□□ -0.04
LIG3P49916 AC244093.1-201ENST00000610837 814 ntBASIC14.82□□□□□ -0.04
LIG3P49916 MIR6787-201ENST00000616675 61 ntBASIC14.82□□□□□ -0.04
LIG3P49916 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LIG3P49916 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
LIG3P49916 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LIG3P49916 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 ACSM2B-201ENST00000329697 2935 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC14.82□□□□□ -0.04
LIG3P49916 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.82□□□□□ -0.04
LIG3P49916 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.81□□□□□ -0.04
LIG3P49916 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.81□□□□□ -0.04
LIG3P49916 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.81□□□□□ -0.04
LIG3P49916 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 MIR1247-201ENST00000408206 136 ntBASIC14.81□□□□□ -0.04
LIG3P49916 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.81□□□□□ -0.04
LIG3P49916 AC004898.1-201ENST00000451057 766 ntBASIC14.81□□□□□ -0.04
LIG3P49916 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 MIR4783-201ENST00000580343 82 ntBASIC14.81□□□□□ -0.04
LIG3P49916 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.81□□□□□ -0.04
LIG3P49916 AC009955.4-201ENST00000597192 544 ntBASIC14.81□□□□□ -0.04
LIG3P49916 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.81□□□□□ -0.04
LIG3P49916 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
LIG3P49916 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
LIG3P49916 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.81□□□□□ -0.04
LIG3P49916 AGAP12P-201ENST00000585227 2359 ntBASIC14.81□□□□□ -0.04
LIG3P49916 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LIG3P49916 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIG3P49916 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms