Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.71□□□□□ -0.21
PCNAP12004 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.71□□□□□ -0.21
PCNAP12004 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 SNORD3B-2-202ENST00000571722 791 ntBASIC13.71□□□□□ -0.21
PCNAP12004 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.71□□□□□ -0.21
PCNAP12004 RN7SL219P-201ENST00000582872 296 ntBASIC13.71□□□□□ -0.21
PCNAP12004 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.71□□□□□ -0.21
PCNAP12004 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 AL033527.4-201ENST00000641026 673 ntBASIC13.71□□□□□ -0.21
PCNAP12004 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PCNAP12004 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
PCNAP12004 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
PCNAP12004 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
PCNAP12004 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
PCNAP12004 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.71□□□□□ -0.22
PCNAP12004 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.71□□□□□ -0.22
PCNAP12004 NCLP1-201ENST00000445357 1963 ntBASIC13.71□□□□□ -0.22
PCNAP12004 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
PCNAP12004 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.71□□□□□ -0.22
PCNAP12004 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
PCNAP12004 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
PCNAP12004 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
PCNAP12004 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.7□□□□□ -0.22
PCNAP12004 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC13.7□□□□□ -0.22
PCNAP12004 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.7□□□□□ -0.22
PCNAP12004 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
PCNAP12004 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC13.7□□□□□ -0.22
PCNAP12004 AGAP12P-201ENST00000585227 2359 ntBASIC13.7□□□□□ -0.22
PCNAP12004 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.7□□□□□ -0.22
PCNAP12004 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.7□□□□□ -0.22
PCNAP12004 AC103592.1-201ENST00000394513 664 ntBASIC13.7□□□□□ -0.22
PCNAP12004 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.7□□□□□ -0.22
PCNAP12004 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
PCNAP12004 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.7□□□□□ -0.22
PCNAP12004 AK2P2-201ENST00000439142 405 ntBASIC13.7□□□□□ -0.22
PCNAP12004 PFN1P12-201ENST00000455938 534 ntBASIC13.7□□□□□ -0.22
PCNAP12004 RN7SL277P-201ENST00000481521 288 ntBASIC13.7□□□□□ -0.22
PCNAP12004 AC044849.1-201ENST00000519737 1188 ntBASIC13.7□□□□□ -0.22
PCNAP12004 AC126915.1-201ENST00000522847 1038 ntBASIC13.7□□□□□ -0.22
PCNAP12004 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.7□□□□□ -0.22
PCNAP12004 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.7□□□□□ -0.22
PCNAP12004 AC009779.1-201ENST00000551138 283 ntBASIC13.7□□□□□ -0.22
PCNAP12004 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 AC013355.1-201ENST00000562625 723 ntBASIC13.7□□□□□ -0.22
PCNAP12004 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.7□□□□□ -0.22
PCNAP12004 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.7□□□□□ -0.22
PCNAP12004 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.7□□□□□ -0.22
PCNAP12004 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.7□□□□□ -0.22
PCNAP12004 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
PCNAP12004 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.7□□□□□ -0.22
PCNAP12004 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
PCNAP12004 CES1P1-201ENST00000421606 1704 ntBASIC13.7□□□□□ -0.22
PCNAP12004 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
PCNAP12004 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 AC061965.1-201ENST00000560524 1465 ntBASIC13.69□□□□□ -0.22
PCNAP12004 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms