Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.49
SDCBPO00560 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 AC061965.1-201ENST00000560524 1465 ntBASIC11.96□□□□□ -0.49
SDCBPO00560 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
SDCBPO00560 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 RHPN1-AS1-201ENST00000518049 1918 ntBASIC11.96□□□□□ -0.49
SDCBPO00560 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC11.96□□□□□ -0.49
SDCBPO00560 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC11.96□□□□□ -0.49
SDCBPO00560 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
SDCBPO00560 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 NDUFAB1P1-201ENST00000404262 460 ntBASIC11.96□□□□□ -0.49
SDCBPO00560 PGF-202ENST00000405431 666 ntTSL 5 BASIC11.96□□□□□ -0.49
SDCBPO00560 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC11.96□□□□□ -0.49
SDCBPO00560 AC079178.1-201ENST00000420915 656 ntBASIC11.96□□□□□ -0.49
SDCBPO00560 AC100850.1-201ENST00000506768 649 ntBASIC11.96□□□□□ -0.49
SDCBPO00560 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC11.96□□□□□ -0.49
SDCBPO00560 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC11.96□□□□□ -0.49
SDCBPO00560 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC11.96□□□□□ -0.49
SDCBPO00560 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC11.96□□□□□ -0.49
SDCBPO00560 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC11.96□□□□□ -0.49
SDCBPO00560 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC11.96□□□□□ -0.49
SDCBPO00560 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
SDCBPO00560 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC11.96□□□□□ -0.49
SDCBPO00560 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC11.96□□□□□ -0.49
SDCBPO00560 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC11.96□□□□□ -0.49
SDCBPO00560 WNT11-204ENST00000621122 789 ntTSL 5 BASIC11.96□□□□□ -0.49
SDCBPO00560 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 FAS-202ENST00000352159 1722 ntTSL 5 BASIC11.96□□□□□ -0.49
SDCBPO00560 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SDCBPO00560 AL023775.1-201ENST00000454907 1746 ntBASIC11.96□□□□□ -0.49
SDCBPO00560 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC11.96□□□□□ -0.5
SDCBPO00560 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC11.96□□□□□ -0.5
SDCBPO00560 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
SDCBPO00560 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
SDCBPO00560 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
SDCBPO00560 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 TUBB4AP1-201ENST00000450755 1325 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 AL008718.2-201ENST00000609206 1313 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC11.95□□□□□ -0.5
SDCBPO00560 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 TISP43-201ENST00000409793 538 ntTSL 4 BASIC11.95□□□□□ -0.5
SDCBPO00560 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms