Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AC100850.1-201ENST00000506768 649 ntBASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AC010328.2-201ENST00000597698 1111 ntBASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 Z98259.2-201ENST00000641583 609 ntBASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AC020907.1-201ENST00000616460 1350 ntBASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 LINC00638-201ENST00000555578 2518 ntBASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 TNRC18P1-201ENST00000502875 3650 ntBASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 SHMT1P1-201ENST00000419974 1312 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC022364.1-202ENST00000617468 2409 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 HOMER2P2-201ENST00000451621 847 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AP006547.1-201ENST00000563435 692 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 EEF1DP1-201ENST00000585891 896 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AL591471.1-201ENST00000621855 229 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 GPR182-203ENST00000622922 591 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 PCDHB17P-202ENST00000623466 3066 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms