Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 CSPG4P11-201ENST00000560634 4910 ntBASIC15.93■□□□□ 0.14
ERCC4Q92889 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC15.93■□□□□ 0.14
ERCC4Q92889 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 FMO6P-201ENST00000236166 1620 ntBASIC15.93■□□□□ 0.14
ERCC4Q92889 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
ERCC4Q92889 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC15.93■□□□□ 0.14
ERCC4Q92889 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC15.93■□□□□ 0.14
ERCC4Q92889 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
ERCC4Q92889 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
ERCC4Q92889 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
ERCC4Q92889 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
ERCC4Q92889 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.93■□□□□ 0.14
ERCC4Q92889 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC15.93■□□□□ 0.14
ERCC4Q92889 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC15.93■□□□□ 0.14
ERCC4Q92889 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
ERCC4Q92889 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC15.93■□□□□ 0.14
ERCC4Q92889 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ERCC4Q92889 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
ERCC4Q92889 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
ERCC4Q92889 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 AC009474.1-201ENST00000455096 1565 ntBASIC15.92■□□□□ 0.14
ERCC4Q92889 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 AL354877.1-201ENST00000424412 413 ntBASIC15.92■□□□□ 0.14
ERCC4Q92889 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.92■□□□□ 0.14
ERCC4Q92889 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.92■□□□□ 0.14
ERCC4Q92889 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.92■□□□□ 0.14
ERCC4Q92889 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 AC009884.2-201ENST00000603110 324 ntBASIC15.92■□□□□ 0.14
ERCC4Q92889 AC133540.1-201ENST00000620845 1019 ntBASIC15.92■□□□□ 0.14
ERCC4Q92889 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
ERCC4Q92889 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 MANEA-AS1-201ENST00000564541 2268 ntBASIC15.92■□□□□ 0.14
ERCC4Q92889 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC15.92■□□□□ 0.14
ERCC4Q92889 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ERCC4Q92889 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC15.91■□□□□ 0.14
ERCC4Q92889 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.91■□□□□ 0.14
ERCC4Q92889 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
ERCC4Q92889 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC15.91■□□□□ 0.14
ERCC4Q92889 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
ERCC4Q92889 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
ERCC4Q92889 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ERCC4Q92889 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
ERCC4Q92889 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.91■□□□□ 0.14
ERCC4Q92889 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.91■□□□□ 0.14
ERCC4Q92889 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.91■□□□□ 0.14
ERCC4Q92889 AC023310.1-201ENST00000554836 735 ntBASIC15.91■□□□□ 0.14
ERCC4Q92889 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.91■□□□□ 0.14
ERCC4Q92889 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.91■□□□□ 0.14
ERCC4Q92889 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.91■□□□□ 0.14
ERCC4Q92889 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC15.91■□□□□ 0.14
ERCC4Q92889 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms