Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TPM4P67936 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM4P67936 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TPM4P67936 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC15.77■□□□□ 0.11
TPM4P67936 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC15.77■□□□□ 0.11
TPM4P67936 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC15.77■□□□□ 0.11
TPM4P67936 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC15.77■□□□□ 0.11
TPM4P67936 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM4P67936 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 PPP1R26P2-201ENST00000611403 3595 ntBASIC15.76■□□□□ 0.11
TPM4P67936 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 AGGF1P10-201ENST00000635005 2191 ntBASIC15.76■□□□□ 0.11
TPM4P67936 LMCD1-201ENST00000157600 8405 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM4P67936 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM4P67936 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM4P67936 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TPM4P67936 AP001889.1-201ENST00000525414 633 ntBASIC15.76■□□□□ 0.11
TPM4P67936 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM4P67936 WASH4P-201ENST00000564273 1246 ntBASIC15.76■□□□□ 0.11
TPM4P67936 GNRHR2-203ENST00000581100 1187 ntBASIC15.76■□□□□ 0.11
TPM4P67936 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.76■□□□□ 0.11
TPM4P67936 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM4P67936 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC15.76■□□□□ 0.11
TPM4P67936 MIR6720-201ENST00000611664 98 ntBASIC15.76■□□□□ 0.11
TPM4P67936 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.76■□□□□ 0.11
TPM4P67936 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM4P67936 AC006453.4-201ENST00000636949 1252 ntBASIC15.76■□□□□ 0.11
TPM4P67936 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TPM4P67936 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
TPM4P67936 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM4P67936 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 KRT8P4-201ENST00000509735 1454 ntBASIC15.76■□□□□ 0.11
TPM4P67936 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TPM4P67936 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM4P67936 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM4P67936 AL031719.1-201ENST00000623365 2587 ntBASIC15.76■□□□□ 0.11
TPM4P67936 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 SHMT1P1-201ENST00000419974 1312 ntBASIC15.75■□□□□ 0.11
TPM4P67936 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC15.75■□□□□ 0.11
TPM4P67936 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 MARK2P16-201ENST00000605714 1723 ntBASIC15.75■□□□□ 0.11
TPM4P67936 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TPM4P67936 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.75■□□□□ 0.11
TPM4P67936 AL157407.1-201ENST00000435784 904 ntBASIC15.75■□□□□ 0.11
TPM4P67936 AL645933.1-201ENST00000440087 609 ntBASIC15.75■□□□□ 0.11
TPM4P67936 FAM207CP-201ENST00000443486 507 ntBASIC15.75■□□□□ 0.11
TPM4P67936 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.75■□□□□ 0.11
TPM4P67936 AC022217.1-201ENST00000521069 738 ntBASIC15.75■□□□□ 0.11
TPM4P67936 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.75■□□□□ 0.11
TPM4P67936 AC132192.2-201ENST00000596206 1147 ntBASIC15.75■□□□□ 0.11
TPM4P67936 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.75■□□□□ 0.11
TPM4P67936 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
TPM4P67936 POM121L9P-201ENST00000414583 5018 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC15.75■□□□□ 0.11
TPM4P67936 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TPM4P67936 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM4P67936 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM4P67936 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TPM4P67936 RGS6-203ENST00000402788 5400 ntTSL 2 BASIC15.74■□□□□ 0.11
TPM4P67936 TGFBRAP1-203ENST00000595531 5595 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms