Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
SOX3P41225 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
SOX3P41225 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC13.24□□□□□ -0.29
SOX3P41225 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.24□□□□□ -0.29
SOX3P41225 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC13.24□□□□□ -0.29
SOX3P41225 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 RN7SL530P-201ENST00000485097 298 ntBASIC13.24□□□□□ -0.29
SOX3P41225 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.24□□□□□ -0.29
SOX3P41225 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 AC079336.7-201ENST00000623428 1078 ntBASIC13.24□□□□□ -0.29
SOX3P41225 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SOX3P41225 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SOX3P41225 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX3P41225 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 CR383656.2-201ENST00000548656 2254 ntBASIC13.24□□□□□ -0.29
SOX3P41225 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
SOX3P41225 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 HLA-DQB2-229ENST00000411527 1059 ntBASIC13.23□□□□□ -0.29
SOX3P41225 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.23□□□□□ -0.29
SOX3P41225 AC008723.1-201ENST00000506922 207 ntBASIC13.23□□□□□ -0.29
SOX3P41225 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.23□□□□□ -0.29
SOX3P41225 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.23□□□□□ -0.29
SOX3P41225 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 GOLGA8IP-202ENST00000611635 2100 ntBASIC13.23□□□□□ -0.29
SOX3P41225 LINC01783-202ENST00000614408 828 ntBASIC13.23□□□□□ -0.29
SOX3P41225 BX284668.2-205ENST00000619677 828 ntBASIC13.23□□□□□ -0.29
SOX3P41225 AC015967.2-201ENST00000624092 234 ntBASIC13.23□□□□□ -0.29
SOX3P41225 AC006435.4-201ENST00000625037 234 ntBASIC13.23□□□□□ -0.29
SOX3P41225 AL356737.1-201ENST00000634391 234 ntBASIC13.23□□□□□ -0.29
SOX3P41225 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms