Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
CIITAP33076 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CIITAP33076 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC15.65■□□□□ 0.1
CIITAP33076 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.1
CIITAP33076 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CIITAP33076 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 SSR4-202ENST00000370085 526 ntTSL 2 BASIC15.64■□□□□ 0.09
CIITAP33076 AL391647.1-201ENST00000395664 511 ntBASIC15.64■□□□□ 0.09
CIITAP33076 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC15.64■□□□□ 0.09
CIITAP33076 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC15.64■□□□□ 0.09
CIITAP33076 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.64■□□□□ 0.09
CIITAP33076 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC15.64■□□□□ 0.09
CIITAP33076 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.64■□□□□ 0.09
CIITAP33076 RPL35P9-201ENST00000446059 350 ntBASIC15.64■□□□□ 0.09
CIITAP33076 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CIITAP33076 AC100858.1-201ENST00000514059 1228 ntBASIC15.64■□□□□ 0.09
CIITAP33076 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CIITAP33076 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.64■□□□□ 0.09
CIITAP33076 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC15.64■□□□□ 0.09
CIITAP33076 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CIITAP33076 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.64■□□□□ 0.09
CIITAP33076 ST5-261ENST00000626808 1071 ntTSL 5 BASIC15.64■□□□□ 0.09
CIITAP33076 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC15.64■□□□□ 0.09
CIITAP33076 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
CIITAP33076 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC15.64■□□□□ 0.09
CIITAP33076 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.64■□□□□ 0.09
CIITAP33076 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CIITAP33076 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CIITAP33076 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CIITAP33076 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 CTBP1-AS2-206ENST00000581398 5652 ntBASIC15.63■□□□□ 0.09
CIITAP33076 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC15.63■□□□□ 0.09
CIITAP33076 MPRIPP1-201ENST00000452433 1089 ntBASIC15.63■□□□□ 0.09
CIITAP33076 RN7SL23P-201ENST00000484055 275 ntBASIC15.63■□□□□ 0.09
CIITAP33076 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 WT1-AS_6.1-201ENST00000614919 121 ntBASIC15.63■□□□□ 0.09
CIITAP33076 AC105137.3-201ENST00000617588 984 ntBASIC15.63■□□□□ 0.09
CIITAP33076 AC002044.2-201ENST00000624910 970 ntBASIC15.63■□□□□ 0.09
CIITAP33076 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.63■□□□□ 0.09
CIITAP33076 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
CIITAP33076 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms