Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TSACC-203ENST00000368253 512 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 FPGT-205ENST00000482102 561 ntTSL 4 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC025178.1-201ENST00000503441 834 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 IFI27L1-205ENST00000554544 406 ntTSL 3 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 RN7SL827P-201ENST00000607480 288 ntBASIC13.32□□□□□ -0.28
VPS13AQ96RL7 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC020763.3-201ENST00000625095 2904 ntBASIC13.32□□□□□ -0.28
VPS13AQ96RL7 LINC02154-201ENST00000412485 1497 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 TSPY26P-202ENST00000565928 3884 ntBASIC13.32□□□□□ -0.28
VPS13AQ96RL7 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 ACP1-207ENST00000439645 605 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC067942.2-201ENST00000506227 1268 ntBASIC13.32□□□□□ -0.28
VPS13AQ96RL7 HINT1-208ENST00000513012 583 ntTSL 4 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC013269.2-201ENST00000422631 727 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 NDFIP2-AS1-201ENST00000457171 431 ntTSL 3 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC105424.1-201ENST00000514583 209 ntBASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC096713.1-201ENST00000514650 978 ntBASIC13.32□□□□□ -0.28
VPS13AQ96RL7 DHRS7-202ENST00000536410 1194 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 BMF-209ENST00000561282 747 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 ARL17B-207ENST00000575960 731 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 ZNF415-221ENST00000600574 563 ntTSL 3 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 FXYD3-210ENST00000604621 548 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 AC007274.3-201ENST00000619838 385 ntBASIC13.32□□□□□ -0.28
VPS13AQ96RL7 MECP2-226ENST00000640414 897 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13AQ96RL7 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 ATF4P4-201ENST00000393544 1930 ntBASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 DIS3L2P1-201ENST00000509197 559 ntBASIC13.31□□□□□ -0.28
VPS13AQ96RL7 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 AC069503.1-201ENST00000538710 816 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 TLE2-205ENST00000586422 389 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 ENO3-201ENST00000323997 1521 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SPACA5-201ENST00000304355 648 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 EEF1GP2-201ENST00000509352 1243 ntBASIC13.31□□□□□ -0.28
VPS13AQ96RL7 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 AL589743.3-201ENST00000604121 517 ntBASIC13.31□□□□□ -0.28
VPS13AQ96RL7 AC092535.4-201ENST00000609548 397 ntBASIC13.31□□□□□ -0.28
VPS13AQ96RL7 AC073592.10-201ENST00000624789 597 ntBASIC13.31□□□□□ -0.28
VPS13AQ96RL7 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 AL512488.1-201ENST00000433544 1671 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
VPS13AQ96RL7 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms