Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AL161727.1-201ENST00000457409 530 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 METTL7AP1-201ENST00000547343 496 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 AC090079.2-201ENST00000575289 768 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 RN7SL202P-201ENST00000584410 262 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 AC090386.2-201ENST00000623010 1039 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 FLJ16779-201ENST00000612722 7638 ntBASIC15.09■□□□□ 0.01
LRCH3Q96II8 AC117503.4-201ENST00000623229 1418 ntBASIC15.09■□□□□ 0.01
LRCH3Q96II8 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 AC117489.1-201ENST00000625169 3217 ntBASIC15.09■□□□□ 0.01
LRCH3Q96II8 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 ABCD1P4-201ENST00000399687 604 ntBASIC15.09■□□□□ 0.01
LRCH3Q96II8 AC073210.1-201ENST00000414799 232 ntBASIC15.09■□□□□ 0.01
LRCH3Q96II8 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 LINC00571-201ENST00000434565 521 ntTSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 AC133485.6-201ENST00000624045 688 ntBASIC15.09■□□□□ 0.01
LRCH3Q96II8 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC15.09■□□□□ 0.01
LRCH3Q96II8 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LRCH3Q96II8 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.08■□□□□ 0.01
LRCH3Q96II8 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms