Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC106827.1-201ENST00000366454 431 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AL451000.1-201ENST00000451300 1186 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 HIST1H2APS2-201ENST00000454426 370 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AC008972.2-201ENST00000606587 494 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AC254633.1-201ENST00000606790 345 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 BX088702.1-201ENST00000610784 235 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 ST5-261ENST00000626808 1071 ntTSL 5 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 BX640514.1-201ENST00000583223 1918 ntBASIC13.52□□□□□ -0.24
COL28A1Q2UY09 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
COL28A1Q2UY09 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 OLA1P2-201ENST00000395519 1264 ntBASIC13.52□□□□□ -0.25
COL28A1Q2UY09 KRT18P36-201ENST00000411618 1276 ntBASIC13.52□□□□□ -0.25
COL28A1Q2UY09 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 RGS5-216ENST00000449680 788 ntTSL 3 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 RHOQP2-201ENST00000449922 579 ntBASIC13.52□□□□□ -0.25
COL28A1Q2UY09 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 RPL18AP8-201ENST00000486071 528 ntBASIC13.52□□□□□ -0.25
COL28A1Q2UY09 ALG3P1-201ENST00000508806 1114 ntBASIC13.52□□□□□ -0.25
COL28A1Q2UY09 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 AL022334.2-201ENST00000610000 484 ntBASIC13.52□□□□□ -0.25
COL28A1Q2UY09 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL28A1Q2UY09 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms