Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL9A1P20849 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.33□□□□□ -0.12
COL9A1P20849 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
COL9A1P20849 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.33□□□□□ -0.12
COL9A1P20849 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 AC092964.1-201ENST00000623304 1399 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.33□□□□□ -0.12
COL9A1P20849 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.32□□□□□ -0.12
COL9A1P20849 PNLIPRP2-201ENST00000579578 1482 ntAPPRIS P5 TSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 SNORD88B-201ENST00000408454 91 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 APRT-202ENST00000426324 664 ntTSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC14.32□□□□□ -0.12
COL9A1P20849 AC093627.3-201ENST00000467050 574 ntTSL 4 BASIC14.32□□□□□ -0.12
COL9A1P20849 AF186996.6-201ENST00000485294 149 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 BAK1P2-201ENST00000532665 631 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 GOLGA2P10-201ENST00000550961 817 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 SEC11A-203ENST00000558134 971 ntTSL 3 BASIC14.32□□□□□ -0.12
COL9A1P20849 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 AP001020.1-201ENST00000579595 464 ntTSL 3 BASIC14.32□□□□□ -0.12
COL9A1P20849 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC14.32□□□□□ -0.12
COL9A1P20849 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
COL9A1P20849 AC099552.4-201ENST00000624248 949 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 AC068620.4-201ENST00000636730 1182 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 AL354892.3-201ENST00000586101 1630 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 AL355578.1-201ENST00000607405 1328 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 AC243964.3-201ENST00000623022 2028 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 DBET-201ENST00000630918 3363 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.32□□□□□ -0.12
COL9A1P20849 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 FGD5P1-202ENST00000614866 2498 ntBASIC14.32□□□□□ -0.12
COL9A1P20849 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL9A1P20849 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
COL9A1P20849 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL9A1P20849 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 MIR766-201ENST00000390223 111 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 MKL1-204ENST00000402630 747 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 RANP7-201ENST00000418085 644 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 PPP2R2DP1-201ENST00000420526 637 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 AL157702.2-201ENST00000428292 1223 ntTSL 3 BASIC14.31□□□□□ -0.12
COL9A1P20849 AC005722.1-201ENST00000431878 964 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 MTCYBP11-201ENST00000447254 1109 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC14.31□□□□□ -0.12
COL9A1P20849 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.31□□□□□ -0.12
COL9A1P20849 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
COL9A1P20849 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.31□□□□□ -0.12
COL9A1P20849 ELOBP2-201ENST00000526184 355 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 SDHD-204ENST00000528021 1071 ntTSL 3 BASIC14.31□□□□□ -0.12
COL9A1P20849 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms