Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A3P12111 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 ZNF816-201ENST00000270457 582 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A3P12111 KHDC1L-201ENST00000370388 635 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 HUS1-202ENST00000432325 1125 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A3P12111 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL6A3P12111 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.87□□□□□ -0.19
COL6A3P12111 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 ALLC-201ENST00000252505 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 AC018442.1-201ENST00000421439 2061 ntBASIC13.87□□□□□ -0.19
COL6A3P12111 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
COL6A3P12111 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 SIRT4-201ENST00000202967 1217 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 AL391647.1-201ENST00000395664 511 ntBASIC13.87□□□□□ -0.19
COL6A3P12111 AL162386.1-201ENST00000433817 645 ntBASIC13.87□□□□□ -0.19
COL6A3P12111 ADPGK-202ENST00000456471 808 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 USP2-AS1-203ENST00000530002 764 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A3P12111 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 AL139022.1-202ENST00000553633 796 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 NOP16-210ENST00000619979 963 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A3P12111 CPA4-210ENST00000493259 1512 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 RAB30-201ENST00000260056 1393 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 GMNN-202ENST00000356509 1133 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 LAMTOR5-203ENST00000474861 1154 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A3P12111 AC091114.1-201ENST00000522815 630 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A3P12111 TTN-AS1-236ENST00000590040 855 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A3P12111 AL590096.1-202ENST00000618162 580 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A3P12111 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
COL6A3P12111 AC012358.2-201ENST00000430010 1434 ntBASIC13.87□□□□□ -0.19
COL6A3P12111 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A3P12111 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 TTLL1-202ENST00000331018 1185 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 AL353803.1-201ENST00000439014 800 ntTSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 TMX3-202ENST00000443099 913 ntTSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 AC008937.1-201ENST00000453721 914 ntTSL 3 BASIC13.86□□□□□ -0.19
COL6A3P12111 AC092745.1-201ENST00000535746 603 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 ZBTB25-203ENST00000555424 565 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 SORD2P-201ENST00000558556 1069 ntBASIC13.86□□□□□ -0.19
COL6A3P12111 RAB11A-203ENST00000564910 978 ntTSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 MPI-212ENST00000565576 1148 ntTSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 AC253536.2-201ENST00000423307 254 ntBASIC13.86□□□□□ -0.19
COL6A3P12111 RN7SL614P-201ENST00000461850 280 ntBASIC13.86□□□□□ -0.19
COL6A3P12111 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.86□□□□□ -0.19
COL6A3P12111 GMDS-AS1-213ENST00000534441 738 ntTSL 3 BASIC13.86□□□□□ -0.19
COL6A3P12111 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 AC092471.1-201ENST00000536497 572 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 SPATA8-AS1-202ENST00000560888 392 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 AC099343.2-201ENST00000605082 686 ntBASIC13.86□□□□□ -0.19
COL6A3P12111 MEG8_2.1-201ENST00000610604 122 ntBASIC13.86□□□□□ -0.19
COL6A3P12111 AC012313.9-201ENST00000619318 633 ntBASIC13.86□□□□□ -0.19
COL6A3P12111 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 LILRB4-205ENST00000430952 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
COL6A3P12111 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
COL6A3P12111 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 TBP-201ENST00000230354 1861 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A3P12111 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A3P12111 CHMP2A-201ENST00000312547 913 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 AC019185.2-201ENST00000424628 520 ntTSL 4 BASIC13.85□□□□□ -0.19
COL6A3P12111 CYP4F60P-201ENST00000439449 549 ntBASIC13.85□□□□□ -0.19
COL6A3P12111 AL022313.2-201ENST00000442579 372 ntTSL 3 BASIC13.85□□□□□ -0.19
COL6A3P12111 LINC00592-201ENST00000549830 1044 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 BID-211ENST00000611040 419 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 AC092471.2-201ENST00000637219 651 ntBASIC13.85□□□□□ -0.19
COL6A3P12111 AL109615.2-201ENST00000455005 1608 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A3P12111 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A3P12111 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
COL6A3P12111 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A3P12111 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A3P12111 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A3P12111 AC007557.2-201ENST00000440900 583 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms