Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 DIO1-215ENST00000610607 796 ntTSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 MSTO2P-201ENST00000314835 1709 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 DGCR9-201ENST00000609630 2415 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AC064801.2-201ENST00000625052 1303 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 AC099521.3-201ENST00000624251 2938 ntBASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
PDLIM3Q53GG5 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 CD38-201ENST00000226279 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AC018735.1-201ENST00000437208 1502 ntBASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AC007274.2-201ENST00000421675 662 ntBASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AL596276.2-201ENST00000447525 331 ntBASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AC141586.1-203ENST00000567242 366 ntBASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AC004466.1-201ENST00000599515 1080 ntBASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 AL591122.2-201ENST00000624125 1853 ntBASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC11.78□□□□□ -0.52
PDLIM3Q53GG5 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms