Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 NCLP1-201ENST00000445357 1963 ntBASIC12.58□□□□□ -0.4
CLRN1P58418 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 CRCP-204ENST00000398684 492 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 RPS9P1-201ENST00000419943 583 ntBASIC12.58□□□□□ -0.4
CLRN1P58418 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC12.58□□□□□ -0.4
CLRN1P58418 OARD1-212ENST00000482515 832 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 AC090857.1-201ENST00000527400 390 ntBASIC12.58□□□□□ -0.4
CLRN1P58418 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 DUT-208ENST00000559540 1441 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 CMC2-204ENST00000562713 573 ntTSL 3 BASIC12.58□□□□□ -0.4
CLRN1P58418 CMC2-209ENST00000565108 399 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC12.58□□□□□ -0.4
CLRN1P58418 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 AC026740.1-201ENST00000607068 791 ntBASIC12.58□□□□□ -0.4
CLRN1P58418 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
CLRN1P58418 AL805961.1-203ENST00000641078 1258 ntBASIC12.58□□□□□ -0.4
CLRN1P58418 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC12.58□□□□□ -0.4
CLRN1P58418 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
CLRN1P58418 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
CLRN1P58418 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.57□□□□□ -0.4
CLRN1P58418 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC12.57□□□□□ -0.4
CLRN1P58418 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 AC006033.1-201ENST00000440505 426 ntBASIC12.57□□□□□ -0.4
CLRN1P58418 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 DUX4L50-201ENST00000455245 715 ntBASIC12.57□□□□□ -0.4
CLRN1P58418 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 AP001258.2-201ENST00000529891 490 ntBASIC12.57□□□□□ -0.4
CLRN1P58418 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms