Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 AC105129.2-201ENST00000559536 390 ntBASIC13.28□□□□□ -0.28
SOX3P41225 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX3P41225 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 AF254983.2-201ENST00000612331 135 ntBASIC13.28□□□□□ -0.28
SOX3P41225 AC090386.2-201ENST00000623010 1039 ntBASIC13.28□□□□□ -0.28
SOX3P41225 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 LAP3P2-201ENST00000454686 1454 ntBASIC13.28□□□□□ -0.28
SOX3P41225 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 AP002353.1-201ENST00000528257 1599 ntBASIC13.28□□□□□ -0.28
SOX3P41225 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX3P41225 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.27□□□□□ -0.28
SOX3P41225 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.27□□□□□ -0.28
SOX3P41225 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX3P41225 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX3P41225 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
SOX3P41225 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.27□□□□□ -0.28
SOX3P41225 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.27□□□□□ -0.28
SOX3P41225 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.27□□□□□ -0.28
SOX3P41225 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.27□□□□□ -0.28
SOX3P41225 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX3P41225 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SOX3P41225 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
SOX3P41225 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.27□□□□□ -0.29
SOX3P41225 AC116345.2-201ENST00000512837 523 ntBASIC13.27□□□□□ -0.29
SOX3P41225 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.27□□□□□ -0.29
SOX3P41225 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 RTN3P1-201ENST00000536295 711 ntBASIC13.27□□□□□ -0.29
SOX3P41225 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 MEG3_2.1-201ENST00000611456 105 ntBASIC13.27□□□□□ -0.29
SOX3P41225 AL353770.1-201ENST00000614915 403 ntBASIC13.27□□□□□ -0.29
SOX3P41225 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 AL139385.1-201ENST00000611744 3272 ntBASIC13.27□□□□□ -0.29
SOX3P41225 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
SOX3P41225 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC13.27□□□□□ -0.29
SOX3P41225 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.27□□□□□ -0.29
SOX3P41225 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
SOX3P41225 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
SOX3P41225 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SOX3P41225 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SOX3P41225 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 AL445209.1-201ENST00000607269 3491 ntBASIC13.26□□□□□ -0.29
SOX3P41225 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
SOX3P41225 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.26□□□□□ -0.29
SOX3P41225 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.26□□□□□ -0.29
SOX3P41225 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.26□□□□□ -0.29
SOX3P41225 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 AC092580.1-201ENST00000433998 658 ntBASIC13.26□□□□□ -0.29
SOX3P41225 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms