Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CUX1P39880 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 TMEM79-202ENST00000357501 975 ntTSL 3 BASIC22.53■■□□□ 1.2
CUX1P39880 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
CUX1P39880 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC22.53■■□□□ 1.2
CUX1P39880 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC22.53■■□□□ 1.2
CUX1P39880 MIR181D-201ENST00000384853 137 ntBASIC22.53■■□□□ 1.2
CUX1P39880 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC22.53■■□□□ 1.2
CUX1P39880 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC22.53■■□□□ 1.2
CUX1P39880 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC22.53■■□□□ 1.2
CUX1P39880 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC22.53■■□□□ 1.2
CUX1P39880 DSCR9-203ENST00000581640 472 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 AC015818.3-201ENST00000583797 589 ntBASIC22.53■■□□□ 1.2
CUX1P39880 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC22.53■■□□□ 1.2
CUX1P39880 AC073254.1-209ENST00000604677 631 ntTSL 5 BASIC22.53■■□□□ 1.2
CUX1P39880 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 AC148476.1-201ENST00000622182 705 ntBASIC22.53■■□□□ 1.2
CUX1P39880 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC22.53■■□□□ 1.2
CUX1P39880 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 AC020917.4-201ENST00000623994 1999 ntBASIC22.53■■□□□ 1.2
CUX1P39880 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC22.53■■□□□ 1.2
CUX1P39880 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CUX1P39880 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC22.53■■□□□ 1.2
CUX1P39880 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CUX1P39880 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
CUX1P39880 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC22.52■■□□□ 1.2
CUX1P39880 AC010677.1-201ENST00000441690 412 ntBASIC22.52■■□□□ 1.2
CUX1P39880 PRDX3P2-201ENST00000447051 611 ntBASIC22.52■■□□□ 1.2
CUX1P39880 VPS33A-202ENST00000451053 1154 ntTSL 3 BASIC22.52■■□□□ 1.2
CUX1P39880 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC22.52■■□□□ 1.2
CUX1P39880 AC063977.2-201ENST00000601996 421 ntBASIC22.52■■□□□ 1.2
CUX1P39880 HCG18-241ENST00000602290 821 ntTSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC22.52■■□□□ 1.2
CUX1P39880 AC117500.5-201ENST00000623233 527 ntBASIC22.52■■□□□ 1.2
CUX1P39880 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CUX1P39880 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 GLT6D1-201ENST00000371763 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 GLT6D1-202ENST00000613244 1523 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
CUX1P39880 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 RHOH-219ENST00000614836 2114 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
CUX1P39880 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CUX1P39880 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC22.52■■□□□ 1.2
CUX1P39880 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
CUX1P39880 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC22.52■■□□□ 1.19
CUX1P39880 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC22.52■■□□□ 1.19
CUX1P39880 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
CUX1P39880 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
CUX1P39880 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.19
CUX1P39880 MRPL55-207ENST00000366733 834 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
CUX1P39880 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.19
CUX1P39880 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC22.52■■□□□ 1.19
CUX1P39880 RN7SL677P-201ENST00000466970 319 ntBASIC22.52■■□□□ 1.19
CUX1P39880 PRDX2P3-201ENST00000515779 586 ntBASIC22.52■■□□□ 1.19
CUX1P39880 METTL23-211ENST00000589977 617 ntTSL 3 BASIC22.52■■□□□ 1.19
CUX1P39880 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC22.52■■□□□ 1.19
CUX1P39880 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CUX1P39880 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 TRIM39-RPP21-201ENST00000623385 1698 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CUX1P39880 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
CUX1P39880 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC22.51■■□□□ 1.19
CUX1P39880 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC22.51■■□□□ 1.19
CUX1P39880 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC22.51■■□□□ 1.19
CUX1P39880 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC22.51■■□□□ 1.19
CUX1P39880 OR2T33-201ENST00000318021 1066 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
CUX1P39880 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CUX1P39880 THAP4-203ENST00000402545 833 ntTSL 5 BASIC22.51■■□□□ 1.19
CUX1P39880 TMEM256P1-201ENST00000430550 340 ntBASIC22.51■■□□□ 1.19
CUX1P39880 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC22.51■■□□□ 1.19
CUX1P39880 RNF7-205ENST00000480908 782 ntTSL 4 BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms