Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.34□□□□□ -0.11
COL9A1P20849 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
COL9A1P20849 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 LCN12-202ENST00000371633 579 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC14.34□□□□□ -0.11
COL9A1P20849 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 AL049542.1-201ENST00000430231 278 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 AC133141.1-201ENST00000443015 339 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 AC098826.2-201ENST00000452011 651 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 RN7SL794P-201ENST00000469816 280 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC14.34□□□□□ -0.11
COL9A1P20849 ALG1L7P-201ENST00000502317 768 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.34□□□□□ -0.11
COL9A1P20849 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC14.34□□□□□ -0.11
COL9A1P20849 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC14.34□□□□□ -0.11
COL9A1P20849 AC027277.1-201ENST00000535363 533 ntTSL 3 BASIC14.34□□□□□ -0.11
COL9A1P20849 AC078925.1-201ENST00000535370 568 ntTSL 2 BASIC14.34□□□□□ -0.11
COL9A1P20849 KLF17P1-201ENST00000547105 1126 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 AC103996.2-201ENST00000556763 915 ntTSL 3 BASIC14.34□□□□□ -0.11
COL9A1P20849 AP001099.1-201ENST00000579385 855 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC14.34□□□□□ -0.11
COL9A1P20849 AC147067.2-201ENST00000608161 289 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 AP000484.1-201ENST00000620067 1252 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 AC009039.2-201ENST00000624524 529 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
COL9A1P20849 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
COL9A1P20849 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL9A1P20849 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 AC232323.1-201ENST00000540724 2099 ntBASIC14.34□□□□□ -0.11
COL9A1P20849 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.33□□□□□ -0.11
COL9A1P20849 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL9A1P20849 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.11
COL9A1P20849 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL9A1P20849 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL9A1P20849 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL9A1P20849 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.11
COL9A1P20849 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
COL9A1P20849 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.11
COL9A1P20849 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
COL9A1P20849 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL9A1P20849 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
COL9A1P20849 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.33□□□□□ -0.12
COL9A1P20849 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL9A1P20849 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.33□□□□□ -0.12
COL9A1P20849 AC006987.1-201ENST00000413610 527 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC14.33□□□□□ -0.12
COL9A1P20849 RPL18AP16-201ENST00000424057 531 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 FTLP3-201ENST00000427242 528 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 YY1P2-201ENST00000438766 948 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 NME6-211ENST00000447314 621 ntTSL 3 BASIC14.33□□□□□ -0.12
COL9A1P20849 SYS1-DBNDD2-202ENST00000452133 674 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
COL9A1P20849 AL161727.1-201ENST00000457409 530 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 CETN3-205ENST00000522842 664 ntTSL 2 BASIC14.33□□□□□ -0.12
COL9A1P20849 ZNF506-204ENST00000545006 1007 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC14.33□□□□□ -0.12
COL9A1P20849 AC010531.8-201ENST00000623341 685 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 AC138907.10-201ENST00000623708 983 ntBASIC14.33□□□□□ -0.12
COL9A1P20849 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL9A1P20849 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms