Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 HSPB1P2-201ENST00000448722 546 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A2P12110 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 AL356740.1-201ENST00000602192 1297 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 AC115284.2-201ENST00000624646 2054 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 LINC00638-201ENST00000555578 2518 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 AP001972.5-201ENST00000624624 2338 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
COL6A2P12110 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL6A2P12110 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A2P12110 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 AC078875.1-201ENST00000431907 724 ntBASIC13.89□□□□□ -0.19
COL6A2P12110 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A2P12110 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A2P12110 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A2P12110 AC021723.1-201ENST00000486306 515 ntBASIC13.89□□□□□ -0.19
COL6A2P12110 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A2P12110 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.89□□□□□ -0.19
COL6A2P12110 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A2P12110 MIR4741-201ENST00000579822 90 ntBASIC13.89□□□□□ -0.19
COL6A2P12110 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A2P12110 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A2P12110 AL162274.1-201ENST00000617191 1098 ntBASIC13.89□□□□□ -0.19
COL6A2P12110 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 GHET1-201ENST00000627071 1906 ntBASIC13.89□□□□□ -0.19
COL6A2P12110 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL6A2P12110 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A2P12110 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A2P12110 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A2P12110 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms